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Sample GSM872232 Query DataSets for GSM872232
Status Public on Mar 14, 2012
Title BMM_F2A_118_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.57893265680859 33.91837 13.4154054369396 0.2406015 47
ILMN_2956159 13.4881878545018 10944.92 2247.86287390948 0 33
ILMN_2704576 4.4015666523685 32.11797 9.29597929886895 0.4373434 50
ILMN_3135931 13.6651114672082 11447.45 2377.14359688324 0 43
ILMN_2516699 13.7224347345669 11982.04 2596.34544615151 0 42
ILMN_2964873 13.9370770625561 15228.19 3015.586 0 49
ILMN_1377920 13.8206889427679 13186.96 3186.09292582106 0 122
ILMN_2747959 8.97781418471713 444.5496 159.723959572883 0 31
ILMN_2666018 4.6499488980463 34.68125 13.6808116243755 0.1917293 53
ILMN_2851231 12.5073897372045 4872.598 879.915193227166 0 50
ILMN_2948086 12.4133193053513 4604.625 864.045401689298 0 42
ILMN_2675747 12.8354625648841 6237.651 1780.26241209479 0 51
ILMN_1258988 11.2430970865098 2080.297 507.99548181003 0 50
ILMN_2876066 14.3217164163927 18565.91 4397.88059693474 0 34
ILMN_2588052 14.0303542221077 16310.26 4189.44460993743 0 96
ILMN_2658908 4.44073167346716 32.4876 13.0299893067386 0.3922306 42
ILMN_2876071 14.1981373709814 17411.41 4619.487 0 36
ILMN_2696977 13.3602548714397 10147.62 2192.49374820263 0 40
ILMN_2740432 12.3700010249009 4470.544 1322.49285862993 0 44
ILMN_3126986 13.0886597842807 7891.748 1703.36516736639 0 53

Total number of rows: 25697

Table truncated, full table size 1641 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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