NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM89155 Query DataSets for GSM89155
Status Public on Mar 15, 2006
Title Lung_Rep4_Agilent
Sample type RNA
 
Channel 1
Source name Lung_Rep4_Agilent with Cy5
Organism Homo sapiens
Characteristics Human tissue
Extracted molecule total RNA
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference RNA sample
Extracted molecule total RNA
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description Lung tissue
Universal Human Reference RNA sample (Stratagene)
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Dec 23, 2005
Last update date Feb 09, 2006
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE4214 Gene expression profiling of the four human tissues by two microarray platforms and TaqMan real-time PCR

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
15244 0.20037174 322.3934 511.3967 457.3438 485.7813
17001 0 29.52014 69.28526 417.4483 411.3448
34613 0.06233506 657.3176 758.7703 487.5769 525
18208 -0.235235423 354.6104 206.308 463.1 438.9
7286 0.016799071 1489.373 1548.112 567.7826 653.4348
5724 0.016283488 139.9928 145.3414 442.5556 428.8519
4447 0.463857705 66.44921 193.3515 434.7 432.1333
33303 -0.019825105 292.2565 279.2152 455.5517 447.2759
43100 -0.760614249 434.5208 75.40434 470.7407 417.0741
37011 0 36.87644 50.803 416.875 412.0313
10276 0.216279209 1073.145 1765.784 527.8667 686.2
42076 -0.035729038 199.6572 183.8891 445.8966 433.8966
4217 0.031967424 179.6565 193.3795 446.7407 434.4444
7814 0.036807639 192.0309 209.0156 445.5714 436.1429
39609 0.060446644 210.0246 241.3886 442.4138 439.5862
8223 0.053881457 1855.597 2100.705 597.8214 737.9286
13497 0.088124174 2921.276 3578.465 699.8438 975.0938
18134 -0.163834357 552.4702 378.8563 479.6786 463.8929
42657 -0.196432564 187.9952 119.5953 443.0323 424.1613
17766 0.214219013 53878.96 88234.46 5092 15571

Total number of rows: 40492

Table truncated, full table size 2071 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap