NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM96270 Query DataSets for GSM96270
Status Public on Dec 01, 2006
Title HFF2_T3_R3, Spheroid Recovery
Sample type RNA
 
Source name Human Foreskin Fibroblast (HFF2) Primary Cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description 60% confluent human foreskin fibroblast (HFF2) primary cells were split into suspension over agarose to form spheroids and grown for an additional 4 days in suspension over agarose prepared with 15% FBS supplemented DMEM.
Following growth, media was removed and the spheroids were stored on the surface of the agarose in vacuum sealed flasks for a 2 week interval at room temperature in the dark.
The samples were compared against monolayer (at 60% confluence). All samples were conducted in triplicate.
Samples from the two week arrest were removed from storage and supplemented with DMEM (Invitrogen) containing 15% FBS (spheroid recovery sample). These cells were then allowed to grow out as adherent monolayers for 7 days (monolayer recovery sample).
 
Submission date Feb 08, 2006
Last update date Aug 28, 2018
Contact name Richard F. Helm
E-mail(s) helmrf@vt.edu
Phone 540-231-4088
Fax 540-231-9070
URL http://vigen.biochem.vt.edu
Organization name Virginia Polytechnic Institute and State University
Department Biochemistry, Fralin Biotechnology Center
Lab Virginia Tech Center for Genomics
Street address West Campus Drive
City Blacksburg
State/province VA
ZIP/Postal code 24061
Country USA
 
Platform ID GPL570
Series (2)
GSE4217 Spheroid Formation and Recovery of Human Foreskin Fibroblasts at Ambient Temperature
GSE4219 Spheroid Formation and Recovery of Human Foreskin Fibroblasts and T98G Glioma Cells at Ambient Temperature
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript
BASELINE baseline intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE BASELINE ABS_CALL DETECTION P-VALUE
1007_s_at 49 48 A 0.47938037
206200_s_at 74 276 A 0.0952148
206199_at 13 12 A 0.0952148
206198_s_at 6 6 A 0.80542
206197_at 16 19 P 0.00585938
206196_s_at 14 10 A 0.633789
206195_x_at 7 7 A 0.932373
206194_at 27 22 P 0.0375977
206193_s_at 9 8 A 0.601074
206192_at 11 11 A 0.696289
206191_at 8 9 A 0.6887207
206190_at 18 12 A 0.633789
206189_at 16 11 A 0.149658
206188_at 23 37 A 0.27417
206187_at 40 36 A 0.601074
206186_at 18 18 P 0.0302734
206185_at 10 10 A 0.696289
206184_at 11 11 A 0.067627
206183_s_at 23 79 P 0.0302734
206182_at 26 18 A 0.149658

Total number of rows: 54675

Table truncated, full table size 1512 Kbytes.




Supplementary file Size Download File type/resource
GSM96270.CEL.gz 7.7 Mb (ftp)(http) CEL
GSM96270.CHP.gz 299.2 Kb (ftp)(http) CHP
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap