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Sample GSM96284 Query DataSets for GSM96284
Status Public on Dec 01, 2006
Title T98G_T4_R2, Monolayer Recovery
Sample type RNA
 
Source name Human T98G Glioma Cancer Cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description 60% confluent human T98G glioma cancer cells were split into suspension over agarose to form spheroids and grown for an additional 4 days in suspension over agarose prepared with 10% FBS and 5% non essential amino acids supplemented EMEM.
Following growth, media was removed and the spheroids were stored on the surface of the agarose in vacuum sealed flasks for a 2 week interval at room temperature in the dark.
The samples were compared against monolayer (at 60% confluence)samples. All samples were conducted intriplicate.
Samples from the two week arrest were removed from storage and supplemented with EMEM (Invitrogen) containing 15% FBS (spheroid recovery sample). These cells were then allowed to grow out as adherent monolayers for 7 days (monolayer recovery sample).
 
Submission date Feb 08, 2006
Last update date Aug 28, 2018
Contact name Richard F. Helm
E-mail(s) helmrf@vt.edu
Phone 540-231-4088
Fax 540-231-9070
URL http://vigen.biochem.vt.edu
Organization name Virginia Polytechnic Institute and State University
Department Biochemistry, Fralin Biotechnology Center
Lab Virginia Tech Center for Genomics
Street address West Campus Drive
City Blacksburg
State/province VA
ZIP/Postal code 24061
Country USA
 
Platform ID GPL570
Series (2)
GSE4218 Spheroid Formation and Recovery of Human T98G Glioma Cells at Ambient Temperature
GSE4219 Spheroid Formation and Recovery of Human Foreskin Fibroblasts and T98G Glioma Cells at Ambient Temperature
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript
BASELINE baseline intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE BASELINE ABS_CALL DETECTION P-VALUE
1007_s_at 34 46 A 0.117160484
220592_at 6 7 A 0.533936
220591_s_at 7 6 P 0.0239258
220590_at 41 42 A 0.633789
220589_s_at 25 25 A 0.219482
220588_at 11 12 A 0.366211
220587_s_at 23 29 A 0.246094
220586_at 6 6 P 0.0239258
220585_at 8 9 A 0.567627
220584_at 6 6 A 0.953857
220583_at 32 28 A 0.246094
220582_at 14 12 A 0.72583
220581_at 10 9 P 0.0461426
220580_at 7 7 P 0.0141602
220579_at 10 9 A 0.870361
220578_at 6 6 A 0.334473
220577_at 7 7 A 0.067627
220576_at 12 10 A 0.09106445
220575_at 13 11 P 0.0185547
220574_at 9 7 P 0.0302734

Total number of rows: 54675

Table truncated, full table size 1497 Kbytes.




Supplementary file Size Download File type/resource
GSM96284.CEL.gz 7.7 Mb (ftp)(http) CEL
GSM96284.CHP.gz 300.8 Kb (ftp)(http) CHP
Processed data provided as supplementary file

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