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Sample GSM978308 Query DataSets for GSM978308
Status Public on Jul 17, 2013
Title wild-type muscle_AB7
Sample type RNA
 
Source name wild-type muscle
Organism Danio rerio
Characteristics strain: AB
transgene: wild type
tissue type: muscle
Growth protocol Transgenic F0 animals grown until tumor visible, tumor or muscle dissected from adult
Extracted molecule total RNA
Extraction protocol Trizol RNA prep
Label biotin
Label protocol Affymetrix zebrafish array protocol
 
Hybridization protocol Affymetrix zebrafish array protocol
Scan protocol Affymetrix zebrafish array protocol
Data processing Affymetrix Gene Console, followed by GenePattern analysis
 
Submission date Jul 30, 2012
Last update date Jul 17, 2013
Contact name Richard Mark White
E-mail(s) whiter@mskcc.org
Phone 646-888-3415
Organization name Memorial Sloan Kettering Cancer Center
Department Cancer Biology & Genetics
Lab White Lab
Street address 1275 York Avenue MB 424
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL1319
Series (1)
GSE39731 Expression arrays of KRASG12D rhabdomyosarcoma models in zebrafish

Data table header descriptions
ID_REF
VALUE GC-RMA signal

Data table
ID_REF VALUE
AFFX-BioB-3_at 151.8524827
AFFX-BioB-5_at 133.6883946
AFFX-BioB-M_at 179.9680876
AFFX-BioC-3_at 407.8453507
AFFX-BioC-5_at 437.5536731
AFFX-BioDn-3_at 2378.969791
AFFX-BioDn-5_at 772.4854655
AFFX-CreX-3_at 7477.410445
AFFX-CreX-5_at 4374.221343
AFFX-DapX-3_at 911.585566
AFFX-DapX-5_at 137.7452054
AFFX-DapX-M_at 390.9601394
AFFX-Dr-AB076373-1_at 12.20642389
AFFX-Dr-acta1-3_at 24116.81274
AFFX-Dr-acta1-5_at 2051.075378
AFFX-Dr-acta1-5_x_at 7644.504965
AFFX-Dr-acta1-M_at 13045.29288
AFFX-Dr-AF292559-1_at 7.339252787
AFFX-Dr-AF292559-2_s_at 4.895612984
AFFX-Dr-AF292559-3_s_at 6.407679531

Total number of rows: 15617

Table truncated, full table size 436 Kbytes.




Supplementary file Size Download File type/resource
GSM978308_ABR8.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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