or42e1 odorant receptor, family 42, subfamily E, member 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: or42e1provided by ZNC
Official Full Name: odorant receptor, family 42, subfamily E, member 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-000329-16
See related: Ensembl:ENSDARG00000041030 AllianceGenome:ZFIN:ZDB-GENE-000329-16
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ZF1I; ZF1l; or2.6; orzf1i; olfr2.6; or111-1; or15.40; zgc:194674; zgc:194699
Summary: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory epithelium and olfactory rosette. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 15

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	15	NC_007126.7 (31350122..31352135, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	15	NC_007126.6 (31469381..31471394, complement)

Chromosome 15 - NC_007126.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables G protein-coupled receptor activity	IEA Inferred from Electronic Annotation more info
enables odorant binding	IBA Inferred from Biological aspect of Ancestor more info
enables olfactory receptor activity	IBA Inferred from Biological aspect of Ancestor more info
enables olfactory receptor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway	IEA Inferred from Electronic Annotation more info
involved_in detection of chemical stimulus involved in sensory perception of smell	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within signal transduction	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: odorant receptor 111-1; odorant receptor, family D, subfamily 111, member 1

Names: Dr3OR15.31; odor receptor 1I; odorant receptor, family 2, member 6; olfactory receptor protein 2.6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_131593.1 → NP_571668.1 odorant receptor 111-1

See identical proteins and their annotated locations for NP_571668.1

Status: PROVISIONAL

Source sequence(s)

AF012760

UniProtKB/TrEMBL

B3DJ10, O42170

Conserved Domains (2) summary

pfam00001
Location:48 → 298

7tm_1; 7 transmembrane receptor (rhodopsin family)

cl21561
Location:42 → 313

7tm_4; Olfactory receptor