gpn1 GPN-loop GTPase 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: gpn1provided by ZNC
Official Full Name: GPN-loop GTPase 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040801-154
See related: Ensembl:ENSDARG00000043928 AllianceGenome:ZFIN:ZDB-GENE-040801-154
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:100927
Summary: Predicted to enable GTPase activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human GPN1 (GPN-loop GTPase 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 17

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (12658435..12675267)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (12504369..12521201)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IBA Inferred from Biological aspect of Ancestor more info
enables GTPase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: GPN-loop GTPase 1

NP_001003633.1

EC 3.6.5.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001003633.1 → NP_001003633.1 GPN-loop GTPase 1

See identical proteins and their annotated locations for NP_001003633.1

Status: PROVISIONAL

Source sequence(s)

BC078195

UniProtKB/TrEMBL

Q6DC83

Related

ENSDARP00000121489.1, ENSDART00000139918.2

Conserved Domains (2) summary

COG1100
Location:1 → 203

Gem1; GTPase SAR1 family domain [General function prediction only]

pfam03029
Location:1 → 239

ATP_bind_1; Conserved hypothetical ATP binding protein