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    si:dkey-267j14.7 si:dkey-267j14.7 [ Danio rerio (zebrafish) ]

    Gene ID: 799689, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:dkey-267j14.7provided by ZNC
    Official Full Name
    si:dkey-267j14.7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081104-401
    See related
    AllianceGenome:ZFIN:ZDB-GENE-081104-401
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human LRRIQ3 (leucine rich repeats and IQ motif containing 3). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See si:dkey-267j14.7 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (17987594..17992600)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (17951892..17957175)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene TNNI3 interacting kinase Neighboring gene fucose-1-phosphate guanylyltransferase Neighboring gene acyl-CoA thioesterase 11b Neighboring gene single stranded DNA binding protein 3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    leucine-rich repeat and IQ domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      17987594..17992600
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009303876.3 → XP_009302151.1  leucine-rich repeat and IQ domain-containing protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A8M3BBQ2
      Conserved Domains (3) summary
      smart00015
      Location:225 → 238
      IQ; Calmodulin-binding motif
      sd00031
      Location:58 → 79
      LRR_1; leucine-rich repeat [structural motif]
      pfam13855
      Location:56 → 115
      LRR_8; Leucine rich repeat

    2. XM_001339983.7 → XP_001340019.5  leucine-rich repeat and IQ domain-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A8M1PZD3
      Conserved Domains (2) summary
      sd00031
      Location:58 → 79
      LRR_1; leucine-rich repeat [structural motif]
      pfam13855
      Location:56 → 115
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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