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    AT3G63460 transducin family protein / WD-40 repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825521, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G63460
    Gene description
    transducin family protein / WD-40 repeat family protein
    Primary source
    Araport:AT3G63460
    Locus tag
    AT3G63460
    See related
    TAIR:AT3G63460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SEC31B
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    Genomic context

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    See AT3G63460 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    22
    Sequence:
    Chromosome: 3; NC_003074.8 (23430623..23437374, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cytokinin oxidase/dehydrogenase 6 Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene serine carboxypeptidase-like 40 Neighboring gene ncRNA Neighboring gene ATP binding microtubule motor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. COPII genes SEC31A/B are essential for gametogenesis and interchangeable in pollen development in Arabidopsis. Liu X, et al. Plant J, 2021 Mar. PMID 33340171
    2. Secretory COPII Protein SEC31B Is Required for Pollen Wall Development. Zhao B, et al. Plant Physiol, 2016 Nov. PMID 27634427, Free PMC Article
    3. Interactome of the plant-specific ESCRT-III component AtVPS2.2 in Arabidopsis thaliana. Ibl V, et al. J Proteome Res, 2012 Jan 1. PMID 22010978, Free PMC Article
    4. Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. Zhang Y, et al. Plant Cell, 2008 Jun. PMID 18552200, Free PMC Article
    5. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. COPII genes SEC31A/B are essential for gametogenesis and interchangeable in pollen development in Arabidopsis.
      Title: COPII genes SEC31A/B are essential for gametogenesis and interchangeable in pollen development in Arabidopsis.
    2. AtSEC31B plays a vital role in pollen wall development by regulating the secretory pathway of the tapetal cells.
      Title: Secretory COPII Protein SEC31B Is Required for Pollen Wall Development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_001203242.1
    NM_116211.3
    NM_180693.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    transducin family protein / WD-40 repeat family protein
    NP_001190171.1
    • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1).
    NP_191905.3
    • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36280 Blast hits to 25623 proteins in 1259 species: Archae - 42; Bacteria - 4996; Metazoa - 13160; Fungi - 7289; Plants - 4519; Viruses - 551; Other Eukaryotes - 5723 (source: NCBI BLink).
    NP_851024.1
    • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36264 Blast hits to 25632 proteins in 1258 species: Archae - 42; Bacteria - 5004; Metazoa - 13161; Fungi - 7258; Plants - 4512; Viruses - 551; Other Eukaryotes - 5736 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23430623..23437374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180693.2 → NP_851024.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851024.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L611, Q9LY69
      UniProtKB/TrEMBL
      A0A178VFW0, A0A5S9XND4
      Conserved Domains (7) summary
      COG2319
      Location:32 → 337
      WD40; WD40 repeat [General function prediction only]
      pfam08226
      Location:797 → 871
      DUF1720; Domain of unknown function (DUF1720)
      pfam14179
      Location:812 → 889
      YppG; YppG-like protein
      sd00039
      Location:10 → 63
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:86 → 335
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:568 → 784
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
      cl23782
      Location:843 → 944
      RCR; Chitin synthesis regulation, resistance to Congo red

    2. NM_001203242.1 → NP_001190171.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190171.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFW0, A0A5S9XND4, F4J110
      Conserved Domains (7) summary
      COG2319
      Location:32 → 337
      WD40; WD40 repeat [General function prediction only]
      pfam08226
      Location:787 → 861
      DUF1720; Domain of unknown function (DUF1720)
      pfam14179
      Location:802 → 879
      YppG; YppG-like protein
      sd00039
      Location:10 → 63
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:86 → 335
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:558 → 774
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
      cl23782
      Location:833 → 934
      RCR; Chitin synthesis regulation, resistance to Congo red

    3. NM_116211.3 → NP_191905.3  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191905.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFW0, A0A5S9XND4, F4J109
      Conserved Domains (7) summary
      COG2319
      Location:32 → 337
      WD40; WD40 repeat [General function prediction only]
      pfam08226
      Location:795 → 869
      DUF1720; Domain of unknown function (DUF1720)
      pfam14179
      Location:810 → 887
      YppG; YppG-like protein
      sd00039
      Location:10 → 63
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:86 → 335
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl14807
      Location:566 → 782
      ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
      cl23782
      Location:841 → 942
      RCR; Chitin synthesis regulation, resistance to Congo red
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L611.1

    Gene LinkOut

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