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    arl9 ADP-ribosylation factor-like 9 [ Danio rerio (zebrafish) ]

    Gene ID: 751670, updated on 27-Mar-2024

    Summary

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    Official Symbol
    arl9provided by ZNC
    Official Full Name
    ADP-ribosylation factor-like 9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060825-210
    See related
    Ensembl:ENSDARG00000071881 AllianceGenome:ZFIN:ZDB-GENE-060825-210
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:153259
    Summary
    Predicted to enable GTP binding activity. Orthologous to human ARL9 (ADP ribosylation factor like GTPase 9). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See arl9 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (1192309..1201210, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (1178290..1186922, complement)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene HOP homeobox Neighboring gene theg spermatid protein like Neighboring gene signal recognition particle 72 Neighboring gene adenosine deaminase domain containing 1 (testis-specific)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC153259

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ADP-ribosylation factor-like protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045387.1 → NP_001038852.1  ADP-ribosylation factor-like protein 9

      See identical proteins and their annotated locations for NP_001038852.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122210
      UniProtKB/TrEMBL
      Q0P495
      Related
      ENSDARP00000097450.4, ENSDART00000106672.6
      Conserved Domains (2) summary
      COG1100
      Location:75 → 184
      Gem1; GTPase SAR1 family domain [General function prediction only]
      cl21455
      Location:75 → 239
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      1192309..1201210 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021481058.1 → XP_021336733.1  ADP-ribosylation factor-like protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QB51
      Conserved Domains (1) summary
      cl21455
      Location:75 → 183
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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