COL27A1 collagen type XXVII alpha 1 chain [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: COL27A1provided by VGNC
Official Full Name: collagen type XXVII alpha 1 chainprovided by VGNC
Primary source: VGNC:VGNC:59038
See related: Ensembl:ENSCAFG00845009506
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 11

Exon count:: 61

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	11	NC_051815.1 (69536838..69671970)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	11	NC_006593.4 (66815437..66950500)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	11	NC_049232.1 (68822715..68957841)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	11	NC_049271.1 (68052533..68187417)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	11	NC_049752.1 (68083568..68228679)

Chromosome 11 - NC_051815.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables extracellular matrix structural constituent	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: collagen alpha-1(XXVII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051815.1 Reference ROS_Cfam_1.0

Range

69536838..69671970

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038682534.1 → XP_038538462.1 collagen alpha-1(XXVII) chain isoform X2

UniProtKB/TrEMBL

A0A8C0QNV2

Conserved Domains (5) summary

PHA03247
Location:278 → 607

PHA03247; large tegument protein UL36; Provisional

pfam09606
Location:1336 → 1552

Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

pfam01391
Location:1420 → 1474

Collagen; Collagen triple helix repeat (20 copies)

cl02436
Location:1644 → 1842

COLFI; Fibrillar collagen C-terminal domain

cl22861
Location:70 → 221

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
XM_038682533.1 → XP_038538461.1 collagen alpha-1(XXVII) chain isoform X1

UniProtKB/TrEMBL

A0A8C0QNV2

Related

ENSCAFP00845013203.1, ENSCAFT00845016956.1

Conserved Domains (5) summary

PHA03247
Location:278 → 607

PHA03247; large tegument protein UL36; Provisional

pfam09606
Location:1336 → 1552

Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

pfam01391
Location:1420 → 1474

Collagen; Collagen triple helix repeat (20 copies)

cl02436
Location:1645 → 1843

COLFI; Fibrillar collagen C-terminal domain

cl22861
Location:70 → 221

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
XM_038682535.1 → XP_038538463.1 collagen alpha-1(XXVII) chain isoform X3

UniProtKB/TrEMBL

A0A8C0QCM0

Conserved Domains (5) summary

PHA03247
Location:278 → 607

PHA03247; large tegument protein UL36; Provisional

pfam09606
Location:1318 → 1534

Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

pfam01391
Location:1402 → 1456

Collagen; Collagen triple helix repeat (20 copies)

cl02436
Location:1627 → 1825

COLFI; Fibrillar collagen C-terminal domain

cl22861
Location:70 → 221

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

RNA

XR_005434999.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

NC_049271.1 Alternate UMICH_Zoey_3.1

Range

68052533..68187417

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038491067.1 → XP_038346995.1 collagen alpha-1(XXVII) chain isoform X2
XM_038491068.1 → XP_038346996.1 collagen alpha-1(XXVII) chain isoform X3
XM_038491066.1 → XP_038346994.1 collagen alpha-1(XXVII) chain isoform X1

RNA

XR_005333551.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049752.1 Alternate UNSW_CanFamBas_1.0

Range

68083568..68228679

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038617082.1 → XP_038473010.1 collagen alpha-1(XXVII) chain isoform X4
XM_038617083.1 → XP_038473011.1 collagen alpha-1(XXVII) chain isoform X5

RNA

XR_005401628.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049232.1 Alternate UU_Cfam_GSD_1.0

Range

68822715..68957841

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038553205.1 → XP_038409133.1 collagen alpha-1(XXVII) chain isoform X2

UniProtKB/TrEMBL

A0A8C0QNV2
XM_038553206.1 → XP_038409134.1 collagen alpha-1(XXVII) chain isoform X3

UniProtKB/TrEMBL

A0A8C0QCM0
XM_038553204.1 → XP_038409132.1 collagen alpha-1(XXVII) chain isoform X1

UniProtKB/TrEMBL

A0A8C0QNV2

RNA

XR_005367185.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

66815437..66950500

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038657922.1 → XP_038513850.1 collagen alpha-1(XXVII) chain isoform X2

UniProtKB/TrEMBL

A0A8C0QNV2

Conserved Domains (5) summary

PHA03247
Location:284 → 543

PHA03247; large tegument protein UL36; Provisional

pfam09606
Location:1336 → 1552

Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

pfam01391
Location:1420 → 1474

Collagen; Collagen triple helix repeat (20 copies)

cl02436
Location:1644 → 1842

COLFI; Fibrillar collagen C-terminal domain

cl22861
Location:70 → 221

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
XM_038657923.1 → XP_038513851.1 collagen alpha-1(XXVII) chain isoform X3

UniProtKB/TrEMBL

A0A8C0QCM0

Conserved Domains (6) summary

PHA03247
Location:267 → 551

PHA03247; large tegument protein UL36; Provisional

PHA03378
Location:324 → 815

PHA03378; EBNA-3B; Provisional

pfam09606
Location:1318 → 1534

Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

pfam01391
Location:1402 → 1456

Collagen; Collagen triple helix repeat (20 copies)

cl02436
Location:1627 → 1825

COLFI; Fibrillar collagen C-terminal domain

cl22861
Location:70 → 221

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
XM_038657921.1 → XP_038513849.1 collagen alpha-1(XXVII) chain isoform X1

UniProtKB/TrEMBL

A0A8C0QNV2

Conserved Domains (5) summary

PHA03247
Location:284 → 543

PHA03247; large tegument protein UL36; Provisional

pfam09606
Location:1336 → 1552

Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

pfam01391
Location:1420 → 1474

Collagen; Collagen triple helix repeat (20 copies)

cl02436
Location:1645 → 1843

COLFI; Fibrillar collagen C-terminal domain

cl22861
Location:70 → 221

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...