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    tecpr2 tectonin beta-propeller repeat containing 2 [ Danio rerio (zebrafish) ]

    Gene ID: 569212, updated on 27-Mar-2024

    Summary

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    Official Symbol
    tecpr2provided by ZNC
    Official Full Name
    tectonin beta-propeller repeat containing 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-358
    See related
    Ensembl:ENSDARG00000060835 AllianceGenome:ZFIN:ZDB-GENE-060503-358
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-46n18.5
    Summary
    Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 49. Orthologous to human TECPR2 (tectonin beta-propeller repeat containing 2). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See tecpr2 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (29283623..29312494, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (29265946..29295520, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene REST corepressor 1 Neighboring gene ankyrin repeat domain 9 Neighboring gene protein tyrosine phosphatase receptor type Eb Neighboring gene potassium channel tetramerization domain containing 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in protein exit from endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    tectonin beta-propeller repeat-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045179.1 → NP_001038644.1  tectonin beta-propeller repeat-containing protein 2

      Status: PROVISIONAL

      Source sequence(s)
      AL845481
      UniProtKB/TrEMBL
      A0A8N7UYB3, F1QYC9
      Related
      ENSDARP00000094999.5, ENSDART00000104224.5
      Conserved Domains (2) summary
      COG2319
      Location:35 → 363
      WD40; WD40 repeat [General function prediction only]
      pfam06462
      Location:1179 → 1207
      Hyd_WA; Propeller

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      29283623..29312494 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005158791.4 → XP_005158848.1  tectonin beta-propeller repeat-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B5A0, F6P3V2
      Related
      ENSDARP00000121461.2, ENSDART00000133668.4
      Conserved Domains (2) summary
      COG2319
      Location:35 → 369
      WD40; WD40 repeat [General function prediction only]
      pfam06462
      Location:1229 → 1257
      Hyd_WA; Propeller
    Nucleotide Protein Strain
    Heading Accession and Version

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