U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SF3B2 splicing factor 3b subunit 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 476015, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SF3B2provided by VGNC
    Official Full Name
    splicing factor 3b subunit 2provided by VGNC
    Primary source
    VGNC:VGNC:46070
    See related
    Ensembl:ENSCAFG00845014133
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SF3B2 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (52236302..52250785, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (49806472..49820946, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (51700526..51715001, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (51336299..51350773, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (50910523..50925010, complement)

    Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene kinesin light chain 2 Neighboring gene phosphofurin acidic cluster sorting protein 1 Neighboring gene uncharacterized LOC119864265 Neighboring gene galactose-3-O-sulfotransferase 3 Neighboring gene cation channel sperm associated 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW QUALITY PROTEIN: splicing factor 3B subunit 2; splicing factor 3B subunit 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051822.1 Reference ROS_Cfam_1.0

      Range
      52236302..52250785 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038424920.1 → XP_038280848.1  splicing factor 3B subunit 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0SNN1, A0A8I3NV69, A0A8P0SI44
      Related
      ENSCAFP00845019900.1, ENSCAFT00845025292.1
      Conserved Domains (3) summary
      COG5182
      Location:441 → 705
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:470 → 595
      DUF382; Domain of unknown function (DUF382)

    2. XM_038424921.1 → XP_038280849.1  splicing factor 3B subunit 2 isoform X3

      UniProtKB/TrEMBL
      A0A8C0SNN1
      Conserved Domains (3) summary
      COG5182
      Location:441 → 705
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:470 → 595
      DUF382; Domain of unknown function (DUF382)

    3. XM_038424919.1 → XP_038280847.1  splicing factor 3B subunit 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KR88, A0A8C0NVF2, A0A8C0SNN1
      Conserved Domains (3) summary
      COG5182
      Location:442 → 706
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:471 → 596
      DUF382; Domain of unknown function (DUF382)

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049278.1 Alternate UMICH_Zoey_3.1

      Range
      51336299..51350773 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038501157.1 → XP_038357085.1  LOW QUALITY PROTEIN: splicing factor 3B subunit 2 isoform X1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

      Range
      50910523..50925010 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038627983.1 → XP_038483911.1  splicing factor 3B subunit 2 isoform X2

      Conserved Domains (3) summary
      COG5182
      Location:441 → 705
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:470 → 595
      DUF382; Domain of unknown function (DUF382)

    2. XM_038627984.1 → XP_038483912.1  splicing factor 3B subunit 2 isoform X3

      Conserved Domains (3) summary
      COG5182
      Location:441 → 705
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:470 → 595
      DUF382; Domain of unknown function (DUF382)

    3. XM_038627982.1 → XP_038483910.1  splicing factor 3B subunit 2 isoform X1

      Conserved Domains (3) summary
      COG5182
      Location:442 → 706
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:471 → 596
      DUF382; Domain of unknown function (DUF382)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

      Range
      51700526..51715001 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038563859.1 → XP_038419787.1  splicing factor 3B subunit 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0SNN1, A0A8I3NV69, A0A8P0SI44
      Conserved Domains (3) summary
      COG5182
      Location:441 → 705
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:470 → 595
      DUF382; Domain of unknown function (DUF382)

    2. XM_038563860.1 → XP_038419788.1  splicing factor 3B subunit 2 isoform X3

      UniProtKB/TrEMBL
      A0A8C0SNN1
      Conserved Domains (3) summary
      COG5182
      Location:441 → 705
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:470 → 595
      DUF382; Domain of unknown function (DUF382)

    3. XM_038563858.1 → XP_038419786.1  splicing factor 3B subunit 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KR88, A0A8C0NVF2, A0A8C0SNN1
      Conserved Domains (3) summary
      COG5182
      Location:442 → 706
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:471 → 596
      DUF382; Domain of unknown function (DUF382)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      49806472..49820946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022405630.2 → XP_022261338.1  splicing factor 3B subunit 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0SNN1, A0A8I3NV69, A0A8P0SI44
      Conserved Domains (3) summary
      COG5182
      Location:441 → 705
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:470 → 595
      DUF382; Domain of unknown function (DUF382)

    2. XM_005631443.4 → XP_005631500.1  splicing factor 3B subunit 2 isoform X3

      UniProtKB/TrEMBL
      A0A8C0SNN1
      Conserved Domains (3) summary
      COG5182
      Location:441 → 705
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:470 → 595
      DUF382; Domain of unknown function (DUF382)

    3. XM_533224.7 → XP_533224.2  splicing factor 3B subunit 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KR88, A0A8C0NVF2, A0A8C0SNN1
      Conserved Domains (3) summary
      COG5182
      Location:442 → 706
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
      pfam02037
      Location:24 → 57
      SAP; SAP domain
      pfam04037
      Location:471 → 596
      DUF382; Domain of unknown function (DUF382)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials