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    LOC403585 serum amyloid A1 [ Canis lupus familiaris (dog) ]

    Gene ID: 403585, updated on 4-Apr-2024

    Summary

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    Gene symbol
    LOC403585
    Gene description
    serum amyloid A1
    See related
    Ensembl:ENSCAFG00845015397
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    SAA
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    Genomic context

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    See LOC403585 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (41750272..41753587, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (40162403..40165547)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (41325848..41329113)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (40779134..40782399)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (40987277..40990441)

    Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119865026 Neighboring gene serum amyloid A like 1 Neighboring gene serum amyloid A protein-like Neighboring gene serum amyloid A1 Neighboring gene serum amyloid A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dog serum amyloid A protein. Identification of multiple isoforms defined by cDNA and protein analyses. Sellar GC, et al. J Biol Chem, 1991 Feb 25. PMID 1995613

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serum amyloid A1
    Names
    serum amyloid A protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003050.1 → NP_001003050.1  serum amyloid A1 precursor

      See identical proteins and their annotated locations for NP_001003050.1

      Status: PROVISIONAL

      Source sequence(s)
      M59172
      UniProtKB/TrEMBL
      A0A8C0PHP3, A0A8P0NB82
      Conserved Domains (1) summary
      pfam00277
      Location:22 → 109
      SAA; Serum amyloid A protein

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051825.1 Reference ROS_Cfam_1.0

      Range
      41750272..41753587 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038429440.1 → XP_038285368.1  serum amyloid A1 isoform X2

      UniProtKB/Swiss-Prot
      P19708
      UniProtKB/TrEMBL
      A0A8C0PHP3, A0A8P0NB82
      Related
      ENSCAFP00845021672.1, ENSCAFT00845027545.1
      Conserved Domains (1) summary
      pfam00277
      Location:22 → 129
      SAA; Serum amyloid A protein

    2. XM_038429441.1 → XP_038285369.1  serum amyloid A1 isoform X2

      UniProtKB/Swiss-Prot
      P19708
      UniProtKB/TrEMBL
      A0A8C0PHP3, A0A8P0NB82
      Conserved Domains (1) summary
      pfam00277
      Location:22 → 129
      SAA; Serum amyloid A protein

    3. XM_038429439.1 → XP_038285367.1  serum amyloid A1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0PHP3, A0A8P0NB82
      Conserved Domains (1) summary
      pfam00277
      Location:46 → 151
      SAA; Serum amyloid A protein

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049281.1 Alternate UMICH_Zoey_3.1

      Range
      40779134..40782399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

      Range
      40987277..40990441
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

      Range
      41325848..41329113
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      40162403..40165547
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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