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    LOC480926 melanoma-associated antigen D4 [ Canis lupus familiaris (dog) ]

    Gene ID: 480926, updated on 22-Jan-2024

    Summary

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    Gene symbol
    LOC480926
    Gene description
    melanoma-associated antigen D4
    See related
    Ensembl:ENSCAFG00845027873
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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    Genomic context

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    See LOC480926 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (44710447..44718128, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (36229060..36236744, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (44939991..44947695, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (44546406..44554089, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (44741991..44749675)

    Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit H-like Neighboring gene 60S ribosomal protein L26-like Neighboring gene small nucleolar RNA SNORA11 Neighboring gene melanoma-associated antigen D4-like Neighboring gene small nucleolar RNA SNORA11 Neighboring gene eukaryotic translation initiation factor 3 subunit H-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    melanoma-associated antigen D4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051843.1 Reference ROS_Cfam_1.0

      Range
      44710447..44718128 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038450042.1 → XP_038305970.1  melanoma-associated antigen D4

      UniProtKB/TrEMBL
      A0A8C0NA98, A0A8C0R1E1, A0A8C0SMU5, A0A8I3PV41, A0A8P0TDP7
      Related
      ENSCAFP00845038615.1, ENSCAFT00845049207.1
      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    2. XM_038450043.1 → XP_038305971.1  melanoma-associated antigen D4

      UniProtKB/TrEMBL
      A0A8C0NA98, A0A8C0R1E1, A0A8C0SMU5, A0A8I3PV41, A0A8P0TDP7
      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049299.1 Alternate UMICH_Zoey_3.1

      Range
      44546406..44554089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038523498.1 → XP_038379426.1  melanoma-associated antigen D4

      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    2. XM_038523499.1 → XP_038379427.1  melanoma-associated antigen D4

      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    3. XM_038523500.1 → XP_038379428.1  melanoma-associated antigen D4

      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

      Range
      44741991..44749675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038651980.1 → XP_038507908.1  melanoma-associated antigen D4

      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    2. XM_038651979.1 → XP_038507907.1  melanoma-associated antigen D4

      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    3. XM_038651981.1 → XP_038507909.1  melanoma-associated antigen D4

      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

      Range
      44939991..44947695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038587474.1 → XP_038443402.1  melanoma-associated antigen D4

      UniProtKB/TrEMBL
      A0A8C0NA98, A0A8C0R1E1, A0A8C0SMU5, A0A8I3PV41, A0A8P0TDP7
      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    2. XM_038587475.1 → XP_038443403.1  melanoma-associated antigen D4

      UniProtKB/TrEMBL
      A0A8C0NA98, A0A8C0R1E1, A0A8C0SMU5, A0A8I3PV41, A0A8P0TDP7
      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    3. XM_038587476.1 → XP_038443404.1  melanoma-associated antigen D4

      UniProtKB/TrEMBL
      A0A8C0NA98, A0A8C0R1E1, A0A8C0SMU5, A0A8I3PV41, A0A8P0TDP7
      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      36229060..36236744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005641366.4 → XP_005641423.1  melanoma-associated antigen D4

      See identical proteins and their annotated locations for XP_005641423.1

      UniProtKB/TrEMBL
      A0A8C0NA98, A0A8C0R1E1, A0A8C0SMU5, A0A8I3PV41, A0A8P0TDP7
      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    2. XM_538047.7 → XP_538047.3  melanoma-associated antigen D4

      See identical proteins and their annotated locations for XP_538047.3

      UniProtKB/TrEMBL
      A0A8C0NA98, A0A8C0R1E1, A0A8C0SMU5, A0A8I3PV41, A0A8P0TDP7
      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family

    3. XM_038464888.1 → XP_038320816.1  melanoma-associated antigen D4

      UniProtKB/TrEMBL
      A0A8C0NA98, A0A8C0R1E1, A0A8C0SMU5, A0A8I3PV41, A0A8P0TDP7
      Conserved Domains (2) summary
      PRK12323
      Location:153 → 400
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam01454
      Location:421 → 588
      MAGE; MAGE family
    Nucleotide Protein
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