U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    UIMC1 ubiquitin interaction motif containing 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 611298, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    UIMC1provided by VGNC
    Official Full Name
    ubiquitin interaction motif containing 1provided by VGNC
    Primary source
    VGNC:VGNC:48127
    See related
    Ensembl:ENSCAFG00845011414
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See UIMC1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (36704960..36832383)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (36306323..36433335)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (37226943..37354416)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (36531498..36658474)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (36719094..36846322)

    Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene normal mucosa of esophagus-specific gene 1 protein Neighboring gene zinc finger protein 346 Neighboring gene uncharacterized LOC102152356 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC119871502 Neighboring gene uncharacterized LOC102152401 Neighboring gene uncharacterized LOC119871503 Neighboring gene hexokinase 3 Neighboring gene unc-5 netrin receptor A

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BRCA1-A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    BRCA1-A complex subunit RAP80

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051808.1 Reference ROS_Cfam_1.0

      Range
      36704960..36832383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038663287.1 → XP_038519215.1  BRCA1-A complex subunit RAP80 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KCK0, A0A8C0M3Y3, A0A8C0YZX9, A0A8I3NJJ6
      Related
      ENSCAFP00845015903.1, ENSCAFT00845020292.1
      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    2. XM_038663288.1 → XP_038519216.1  BRCA1-A complex subunit RAP80 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KCK0, A0A8C0M3Y3, A0A8C0YZX9, A0A8I3NJJ6
      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    3. XM_038663289.1 → XP_038519217.1  BRCA1-A complex subunit RAP80 isoform X2

      UniProtKB/TrEMBL
      A0A8C0M3Y3
      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    4. XM_038663290.1 → XP_038519218.1  BRCA1-A complex subunit RAP80 isoform X3

      Conserved Domains (1) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif

    5. XM_038663291.1 → XP_038519219.1  BRCA1-A complex subunit RAP80 isoform X4

      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049264.1 Alternate UMICH_Zoey_3.1

      Range
      36531498..36658474
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038473605.1 → XP_038329533.1  BRCA1-A complex subunit RAP80 isoform X1

      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    2. XM_038473606.1 → XP_038329534.1  BRCA1-A complex subunit RAP80 isoform X1

      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    3. XM_038473607.1 → XP_038329535.1  BRCA1-A complex subunit RAP80 isoform X2

      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    4. XM_038473608.1 → XP_038329536.1  BRCA1-A complex subunit RAP80 isoform X3

      Conserved Domains (1) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif

    5. XM_038473609.1 → XP_038329537.1  BRCA1-A complex subunit RAP80 isoform X4

      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

      Range
      36719094..36846322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038598982.1 → XP_038454910.1  BRCA1-A complex subunit RAP80 isoform X1

      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    2. XM_038598983.1 → XP_038454911.1  BRCA1-A complex subunit RAP80 isoform X1

      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    3. XM_038598984.1 → XP_038454912.1  BRCA1-A complex subunit RAP80 isoform X2

      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    4. XM_038598985.1 → XP_038454913.1  BRCA1-A complex subunit RAP80 isoform X3

      Conserved Domains (1) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif

    5. XM_038598986.1 → XP_038454914.1  BRCA1-A complex subunit RAP80 isoform X4

      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

      Range
      37226943..37354416
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038534679.1 → XP_038390607.1  BRCA1-A complex subunit RAP80 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KCK0, A0A8C0M3Y3, A0A8C0YZX9, A0A8I3NJJ6
      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    2. XM_038534680.1 → XP_038390608.1  BRCA1-A complex subunit RAP80 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KCK0, A0A8C0M3Y3, A0A8C0YZX9, A0A8I3NJJ6
      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    3. XM_038534681.1 → XP_038390609.1  BRCA1-A complex subunit RAP80 isoform X2

      UniProtKB/TrEMBL
      A0A8C0M3Y3
      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    4. XM_038534682.1 → XP_038390610.1  BRCA1-A complex subunit RAP80 isoform X3

      Conserved Domains (1) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif

    5. XM_038534683.1 → XP_038390611.1  BRCA1-A complex subunit RAP80 isoform X4

      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      36306323..36433335
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_848945.6 → XP_854038.2  BRCA1-A complex subunit RAP80 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KCK0, A0A8C0M3Y3, A0A8C0YZX9, A0A8I3NJJ6
      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    2. XM_038494098.1 → XP_038350026.1  BRCA1-A complex subunit RAP80 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KCK0, A0A8C0M3Y3, A0A8C0YZX9, A0A8I3NJJ6
      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    3. XM_022417669.2 → XP_022273377.1  BRCA1-A complex subunit RAP80 isoform X2

      UniProtKB/TrEMBL
      A0A8C0M3Y3
      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains

    4. XM_022417670.2 → XP_022273378.1  BRCA1-A complex subunit RAP80 isoform X3

      Conserved Domains (1) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif

    5. XM_022417671.2 → XP_022273379.1  BRCA1-A complex subunit RAP80 isoform X4

      Conserved Domains (2) summary
      pfam18282
      Location:72 → 128
      RAP80_UIM; RAP80 N-terminal ubiquitin interaction motif
      cd20912
      Location:272 → 329
      AIR_RAP80-like; ABRAXAS Interacting Region (AIR) of Receptor-Associated Protein 80 (RAP80), and related domains
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.