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    LOC477072 serotransferrin [ Canis lupus familiaris (dog) ]

    Gene ID: 477072, updated on 5-Mar-2024

    Summary

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    Gene symbol
    LOC477072
    Gene description
    serotransferrin
    See related
    Ensembl:ENSCAFG00845030091
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See LOC477072 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (31178649..31204226)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (30637375..30662940)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (31177861..31203421)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (30872448..30898034)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (30930277..30955845)

    Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase II binding protein 1 Neighboring gene inhibitor of carbonic anhydrase Neighboring gene uncharacterized LOC119865392 Neighboring gene uncharacterized LOC119865393 Neighboring gene SRP receptor subunit beta Neighboring gene RAB6B, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ferric iron binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in antibacterial humoral response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular iron ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in iron ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in recycling endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serotransferrin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051827.1 Reference ROS_Cfam_1.0

      Range
      31178649..31204226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038432385.1 → XP_038288313.1  serotransferrin

      UniProtKB/TrEMBL
      A0A8C0LV82
      Related
      ENSCAFP00845041997.1, ENSCAFT00845053451.1
      Conserved Domains (2) summary
      cd13617
      Location:361 → 689
      PBP2_transferrin_C; The C-lobe of transferrin, a member of the type 2 periplasmic binding protein fold superfamily
      pfam00405
      Location:26 → 350
      Transferrin

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049283.1 Alternate UMICH_Zoey_3.1

      Range
      30872448..30898034
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038507684.1 → XP_038363612.1  serotransferrin

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

      Range
      30930277..30955845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038635117.1 → XP_038491045.1  serotransferrin

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

      Range
      31177861..31203421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038570924.1 → XP_038426852.1  serotransferrin

      UniProtKB/TrEMBL
      A0A8C0LV82

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      30637375..30662940
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_534268.7 → XP_534268.4  serotransferrin

      UniProtKB/TrEMBL
      A0A8C0LV82
      Conserved Domains (4) summary
      smart00094
      Location:364 → 690
      TR_FER; Transferrin
      cd13617
      Location:361 → 689
      PBP2_transferrin_C; The C-lobe of transferrin, a member of the type 2 periplasmic binding protein fold superfamily
      cd13618
      Location:25 → 349
      PBP2_transferrin_N; The N-lobe of transferrin, a member of the type 2 periplasmic binding protein fold superfamily
      pfam00405
      Location:26 → 350
      Transferrin; Transferrin
    Nucleotide Protein
    Heading Accession and Version

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