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    ARID4A AT-rich interaction domain 4A [ Canis lupus familiaris (dog) ]

    Gene ID: 480339, updated on 5-Mar-2024

    Summary

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    Official Symbol
    ARID4Aprovided by VGNC
    Official Full Name
    AT-rich interaction domain 4Aprovided by VGNC
    Primary source
    VGNC:VGNC:38098
    See related
    Ensembl:ENSCAFG00845018674
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ARID4A in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (33903140..33971303)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (33422854..33490937)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (33958187..34026298)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (33515824..33583896)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (33583347..33651977)

    Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC611178 Neighboring gene proteasome 20S subunit alpha 3 Neighboring gene 10 kDa heat shock protein, mitochondrial-like Neighboring gene translocase of outer mitochondrial membrane 20 like Neighboring gene translocase of inner mitochondrial membrane 9 Neighboring gene KIAA0586

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 4A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051812.1 Reference ROS_Cfam_1.0

      Range
      33903140..33971303
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038673740.1 → XP_038529668.1  AT-rich interactive domain-containing protein 4A isoform X1

      UniProtKB/TrEMBL
      A0A8C0K924, A0A8C0LTQ3, A0A8P0SJL0
      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    2. XM_038673742.1 → XP_038529670.1  AT-rich interactive domain-containing protein 4A isoform X2

      UniProtKB/TrEMBL
      A0A8C0K924, A0A8I3P7E9
      Related
      ENSCAFP00845025869.1, ENSCAFT00845033050.1
      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    3. XM_038673741.1 → XP_038529669.1  AT-rich interactive domain-containing protein 4A isoform X1

      UniProtKB/TrEMBL
      A0A8C0K924, A0A8C0LTQ3, A0A8P0SJL0
      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    RNA

    1. XR_005431028.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049268.1 Alternate UMICH_Zoey_3.1

      Range
      33515824..33583896
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038483363.1 → XP_038339291.1  AT-rich interactive domain-containing protein 4A isoform X1

      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    2. XM_038483365.1 → XP_038339293.1  AT-rich interactive domain-containing protein 4A isoform X2

      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    3. XM_038483364.1 → XP_038339292.1  AT-rich interactive domain-containing protein 4A isoform X1

      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    RNA

    1. XR_005329431.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

      Range
      33583347..33651977
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038608937.1 → XP_038464865.1  AT-rich interactive domain-containing protein 4A isoform X1

      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    2. XM_038608939.1 → XP_038464867.1  AT-rich interactive domain-containing protein 4A isoform X2

      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    3. XM_038608938.1 → XP_038464866.1  AT-rich interactive domain-containing protein 4A isoform X1

      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    RNA

    1. XR_005397768.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

      Range
      33958187..34026298
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038544824.1 → XP_038400752.1  AT-rich interactive domain-containing protein 4A isoform X1

      UniProtKB/TrEMBL
      A0A8C0K924, A0A8C0LTQ3, A0A8P0SJL0
      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    2. XM_038544826.1 → XP_038400754.1  AT-rich interactive domain-containing protein 4A isoform X2

      UniProtKB/TrEMBL
      A0A8C0K924, A0A8I3P7E9
      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    3. XM_038544825.1 → XP_038400753.1  AT-rich interactive domain-containing protein 4A isoform X1

      UniProtKB/TrEMBL
      A0A8C0K924, A0A8C0LTQ3, A0A8P0SJL0
      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    RNA

    1. XR_005363313.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      33422854..33490937
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005623445.4 → XP_005623502.1  AT-rich interactive domain-containing protein 4A isoform X1

      UniProtKB/TrEMBL
      A0A8C0K924, A0A8C0LTQ3, A0A8P0SJL0
      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    2. XM_537461.7 → XP_537461.3  AT-rich interactive domain-containing protein 4A isoform X2

      UniProtKB/TrEMBL
      A0A8C0K924, A0A8I3P7E9
      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    3. XM_014115931.3 → XP_013971406.1  AT-rich interactive domain-containing protein 4A isoform X1

      UniProtKB/TrEMBL
      A0A8C0K924, A0A8C0LTQ3, A0A8P0SJL0
      Conserved Domains (5) summary
      cd16882
      Location:311 → 397
      ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
      cd18641
      Location:577 → 635
      CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
      pfam08169
      Location:170 → 262
      RBB1NT; RBB1NT (NUC162) domain
      cd20390
      Location:62 → 114
      Tudor_ARID4_rpt2; second Tudor domain found in AT-rich interactive domain-containing protein ARID4 family
      cd20459
      Location:4 → 61
      Tudor_ARID4A_rpt1; first Tudor domain found in AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins

    RNA

    1. XR_002629168.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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