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    zgc:77739 zgc:77739 [ Danio rerio (zebrafish) ]

    Gene ID: 393870, updated on 27-Mar-2024

    Summary

    Official Symbol
    zgc:77739provided by ZNC
    Official Full Name
    zgc:77739provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1862
    See related
    Ensembl:ENSDARG00000017985 AllianceGenome:ZFIN:ZDB-GENE-040426-1862
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human C4orf33 (chromosome 4 open reading frame 33). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    See zgc:77739 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (12394197..12397886)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (11707395..11711086)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene clathrin, light chain A Neighboring gene sodium channel and clathrin linker 1 Neighboring gene uncharacterized LOC103911926 Neighboring gene protocadherin 10a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC77739

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    UPF0462 protein C4orf33 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200896.1NP_957190.1  UPF0462 protein C4orf33 homolog

      See identical proteins and their annotated locations for NP_957190.1

      Status: PROVISIONAL

      Source sequence(s)
      BC064302
      UniProtKB/Swiss-Prot
      Q6P2T7
      Related
      ENSDARP00000007907.5, ENSDART00000008127.6
      Conserved Domains (1) summary
      cl14783
      Location:56171
      DOMON_like; Domon-like ligand-binding domains

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      12394197..12397886
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159803.4XP_005159860.1  UPF0462 protein C4orf33 homolog isoform X1

      See identical proteins and their annotated locations for XP_005159860.1

      UniProtKB/TrEMBL
      A0A8M2B6F7, F1Q6V3
      Related
      ENSDARP00000115436.1, ENSDART00000138622.3
      Conserved Domains (1) summary
      cl14783
      Location:56171
      DOMON_like; Domon-like ligand-binding domains
    2. XM_005159804.4XP_005159861.1  UPF0462 protein C4orf33 homolog isoform X1

      See identical proteins and their annotated locations for XP_005159861.1

      UniProtKB/TrEMBL
      A0A8M2B6F7, F1Q6V3
      Related
      ENSDARP00000145139.1, ENSDART00000184296.1
      Conserved Domains (1) summary
      cl14783
      Location:56171
      DOMON_like; Domon-like ligand-binding domains

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394464.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      52201..55583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)