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    si:ch1073-143l10.2 si:ch1073-143l10.2 [ Danio rerio (zebrafish) ]

    Gene ID: 565165, updated on 11-Apr-2024

    Summary

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    Official Symbol
    si:ch1073-143l10.2provided by ZNC
    Official Full Name
    si:ch1073-143l10.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-863
    See related
    Ensembl:ENSDARG00000094899 AllianceGenome:ZFIN:ZDB-GENE-030131-863
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb51c12; wu:fb51c12
    Summary
    Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See si:ch1073-143l10.2 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (22907356..22912246, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (22938055..22942794, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene actinodin3 Neighboring gene adaptor related protein complex 4 subunit mu 1 Neighboring gene arrestin, beta 2a Neighboring gene mediator complex subunit 11 Neighboring gene zgc:103508 Neighboring gene ribonuclease, RNase K b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables protein-membrane adaptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in autophagosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Atg12-Atg5-Atg16 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in autophagosome membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in phagophore assembly site membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    autophagy-related protein 16-1; uncharacterized protein LOC565165
    Names
    autophagy-related protein 16-1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386725.1 → NP_001373654.1  uncharacterized protein LOC565165

      Status: VALIDATED

      Source sequence(s)
      CU469521
      UniProtKB/TrEMBL
      A0A8M3B374, E9QB44
      Conserved Domains (1) summary
      TIGR02168
      Location:79 → 189
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      22907356..22912246 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009305275.3 → XP_009303550.1  autophagy-related protein 16-1

      UniProtKB/TrEMBL
      E9QB44
      Related
      ENSDARP00000116613.1, ENSDART00000131992.2
      Conserved Domains (1) summary
      TIGR02168
      Location:79 → 189
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Nucleotide Protein Strain
    Heading Accession and Version

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