Mrpl55 mitochondrial ribosomal protein L55 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Mrpl55provided by RGD
Official Full Name: mitochondrial ribosomal protein L55provided by RGD
Primary source: RGD:1308161
See related: Ensembl:ENSRNOG00000002943 AllianceGenome:RGD:1308161
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL55 (mitochondrial ribosomal protein L55). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Heart (RPKM 100.6), Kidney (RPKM 77.8) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 10q22

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (44488252..44491401)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (43988676..43991841)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (45552794..45555943)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in translation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of mitochondrial large ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of mitochondrial large ribosomal subunit	ISO Inferred from Sequence Orthology more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: large ribosomal subunit protein mL55

Names: 39S ribosomal protein L55, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001105782.1 → NP_001099252.1 large ribosomal subunit protein mL55

See identical proteins and their annotated locations for NP_001099252.1

Status: PROVISIONAL

Source sequence(s)

CH473948

UniProtKB/TrEMBL

A6HEY4, A6HEY6, D3ZF99

Related

ENSRNOP00000003931.5, ENSRNOT00000003931.7

Conserved Domains (1) summary

pfam09776
Location:10 → 124

Mitoc_L55; Mitochondrial ribosomal protein L55

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086028.1 Reference GRCr8

Range

44488252..44491401

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063268604.1 → XP_063124674.1 large ribosomal subunit protein mL55 isoform X1

UniProtKB/TrEMBL

A6HEY6, D3ZF99
XM_063268603.1 → XP_063124673.1 large ribosomal subunit protein mL55 isoform X1

UniProtKB/TrEMBL

A6HEY6, D3ZF99
XM_006246447.5 → XP_006246509.1 large ribosomal subunit protein mL55 isoform X1

See identical proteins and their annotated locations for XP_006246509.1

UniProtKB/TrEMBL

A6HEY4, A6HEY6, D3ZF99

Conserved Domains (1) summary

pfam09776
Location:10 → 124

Mitoc_L55; Mitochondrial ribosomal protein L55
XM_039085388.2 → XP_038941316.1 large ribosomal subunit protein mL55 isoform X1

UniProtKB/TrEMBL

A6HEY4, A6HEY6, D3ZF99

Conserved Domains (1) summary

pfam09776
Location:10 → 124

Mitoc_L55; Mitochondrial ribosomal protein L55
XM_006246446.5 → XP_006246508.1 large ribosomal subunit protein mL55 isoform X1

See identical proteins and their annotated locations for XP_006246508.1

UniProtKB/TrEMBL

A6HEY4, A6HEY6, D3ZF99

Conserved Domains (1) summary

pfam09776
Location:10 → 124

Mitoc_L55; Mitochondrial ribosomal protein L55
XM_063268601.1 → XP_063124671.1 large ribosomal subunit protein mL55 isoform X1

UniProtKB/TrEMBL

A6HEY6, D3ZF99
XM_063268602.1 → XP_063124672.1 large ribosomal subunit protein mL55 isoform X1

UniProtKB/TrEMBL

A6HEY6, D3ZF99