or70a4 odorant receptor, family 70, subfamily A, member 4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: or70a4provided by ZNC
Official Full Name: odorant receptor, family 70, subfamily A, member 4provided by ZNC
Primary source: ZFIN:ZDB-GENE-010309-3
See related: Ensembl:ENSDARG00000035048 AllianceGenome:ZFIN:ZDB-GENE-010309-3
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: or9.3; or21.41; or115-10; zgc:123156
Summary: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory epithelium. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1G1 (olfactory receptor family 1 subfamily G member 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (40235899..40237974)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (40212346..40214421)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables odorant binding	IBA Inferred from Biological aspect of Ancestor more info
enables olfactory receptor activity	IBA Inferred from Biological aspect of Ancestor more info
enables olfactory receptor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway	IEA Inferred from Electronic Annotation more info
involved_in detection of chemical stimulus involved in sensory perception of smell	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within signal transduction	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: odorant receptor 115-10; odorant receptor, family F, subfamily 115, member 10

Names: odorant receptor, family 9, member 3; receptor 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_131743.1 → NP_571818.1 odorant receptor 115-10

See identical proteins and their annotated locations for NP_571818.1

Status: PROVISIONAL

Source sequence(s)

U42392

UniProtKB/TrEMBL

Q2PRI2, Q90426

Conserved Domains (2) summary

pfam00001
Location:41 → 290

7tm_1; 7 transmembrane receptor (rhodopsin family)

cl21561
Location:34 → 306

7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007132.7 Reference GRCz11 Primary Assembly

Range

40235899..40237974

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009295656.1 → XP_009293931.1 odorant receptor, family F, subfamily 115, member 10 isoform X1

See identical proteins and their annotated locations for XP_009293931.1

UniProtKB/TrEMBL

Q2PRI2, Q90426

Related

ENSDARP00000121191.1, ENSDART00000132308.3

Conserved Domains (2) summary

pfam00001
Location:41 → 290

7tm_1; 7 transmembrane receptor (rhodopsin family)

cl21561
Location:34 → 306

7tm_4; Olfactory receptor

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001111084.1: Suppressed sequence

Description

NM_001111084.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.