slmapa sarcolemma associated protein a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slmapaprovided by ZNC
Official Full Name: sarcolemma associated protein aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-061013-184
See related: Ensembl:ENSDARG00000054458 AllianceGenome:ZFIN:ZDB-GENE-061013-184
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fa03e05; fb39b03; wu:fa03e05; wu:fb39b03; zgc:153887
Summary: Predicted to be involved in protein localization to plasma membrane; regulation of membrane depolarization during cardiac muscle cell action potential; and regulation of voltage-gated sodium channel activity. Predicted to act upstream of or within muscle contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLMAP (sarcolemma associated protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 11

Exon count:: 25

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	11	NC_007122.7 (42305549..42418379, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	11	NC_007122.6 (42036675..42148441, complement)

Chromosome 11 - NC_007122.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

fj35g09.x1 (e-PCR)
- UniSTS:199192

AA497290 (e-PCR)
- UniSTS:206936

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in protein localization to plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of membrane depolarization during cardiac muscle cell action potential	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of voltage-gated sodium channel activity	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: sarcolemma associated protein a; sarcolemmal membrane-associated protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001077254.1 → NP_001070722.1 sarcolemma associated protein a

See identical proteins and their annotated locations for NP_001070722.1

Status: PROVISIONAL

Source sequence(s)

BC124763

UniProtKB/TrEMBL

A0A8M1NB23, Q08BE3

Related

ENSDARP00000138370.1, ENSDART00000160704.2

Conserved Domains (5) summary

COG1716
Location:46 → 109

FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]

cd00060
Location:14 → 108

FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...

TIGR02168
Location:163 → 793

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam17023
Location:287 → 475

DUF5098; Domain of unknown function (DUF5098)

cl19219
Location:297 → 367

DUF342; Protein of unknown function (DUF342)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007122.7 Reference GRCz11 Primary Assembly

Range

42305549..42418379 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005168063.4 → XP_005168120.1 sarcolemmal membrane-associated protein isoform X4

UniProtKB/TrEMBL

A0A8M2BFI3

Conserved Domains (4) summary

COG1716
Location:46 → 109

FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]

cd00060
Location:14 → 108

FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...

TIGR02168
Location:163 → 776

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

cl19219
Location:297 → 367

DUF342; Protein of unknown function (DUF342)
XM_005168062.4 → XP_005168119.1 sarcolemmal membrane-associated protein isoform X3

UniProtKB/TrEMBL

A0A8M2BFH7

Conserved Domains (5) summary

COG1716
Location:46 → 109

FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]

cd00060
Location:14 → 108

FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...

TIGR02168
Location:163 → 793

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam17023
Location:287 → 475

DUF5098; Domain of unknown function (DUF5098)

cl19219
Location:297 → 367

DUF342; Protein of unknown function (DUF342)
XM_005168060.4 → XP_005168117.1 sarcolemmal membrane-associated protein isoform X1

UniProtKB/TrEMBL

A0A2R8QQ99, A0A8M2BG26

Related

ENSDARP00000155262.1, ENSDART00000191086.1

Conserved Domains (5) summary

COG1716
Location:46 → 109

FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]

cd00060
Location:14 → 108

FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...

TIGR02168
Location:163 → 814

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam17023
Location:287 → 496

DUF5098; Domain of unknown function (DUF5098)

cl19219
Location:297 → 367

DUF342; Protein of unknown function (DUF342)
XM_005168061.4 → XP_005168118.1 sarcolemmal membrane-associated protein isoform X2

UniProtKB/TrEMBL

A0A8M2BFG9

Conserved Domains (5) summary

COG1716
Location:46 → 109

FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]

cd00060
Location:14 → 108

FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...

TIGR02168
Location:163 → 814

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

pfam17023
Location:287 → 496

DUF5098; Domain of unknown function (DUF5098)

cl19219
Location:297 → 367

DUF342; Protein of unknown function (DUF342)
XM_005168064.4 → XP_005168121.1 sarcolemmal membrane-associated protein isoform X5

UniProtKB/TrEMBL

A0A8M2BFI9

Conserved Domains (2) summary

TIGR02168
Location:4 → 655

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

cl19219
Location:138 → 208

DUF342; Protein of unknown function (DUF342)