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    CAPN9 calpain 9 [ Gallus gallus (chicken) ]

    Gene ID: 421544, updated on 5-Mar-2024

    Summary

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    Official Symbol
    CAPN9provided by CGNC
    Official Full Name
    calpain 9provided by CGNC
    Primary source
    CGNC:8457
    See related
    Ensembl:ENSGALG00010007771
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CAPN9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (40157407..40185674)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (40055577..40083826)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene component of oligomeric golgi complex 2 Neighboring gene angiotensinogen Neighboring gene C1orf198 homolog Neighboring gene uncharacterized LOC121110372 Neighboring gene microRNA mir-12260 Neighboring gene tetratricopeptide repeat domain 13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression and effect of Calpain9 gene genetic polymorphism on slaughter indicators and intramuscular fat content in chickens. Cui HX, et al. Poult Sci, 2018 Oct 1. PMID 29945255, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain-9
    XP_040523823.1
    XP_040523824.1
    XP_040553593.1
    XP_419585.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      40157407..40185674
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_419585.8 → XP_419585.2  calpain-9 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XTV9, A0A8V0Y1R4
      Related
      ENSGALP00010010114.1, ENSGALT00010018477.1
      Conserved Domains (4) summary
      PTZ00184
      Location:518 → 657
      PTZ00184; calmodulin; Provisional
      pfam00648
      Location:43 → 335
      Peptidase_C2; Calpain family cysteine protease
      pfam01067
      Location:349 → 491
      Calpain_III; Calpain large subunit, domain III
      cl08302
      Location:566 → 621
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    2. XM_040697659.2 → XP_040553593.1  calpain-9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XVU2
      Related
      ENSGALP00010010115.1, ENSGALT00010018479.1
      Conserved Domains (4) summary
      smart00230
      Location:29 → 342
      CysPc; Calpain-like thiol protease family
      cd00214
      Location:347 → 496
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
      cd15897
      Location:522 → 550
      EFh_PEF; EF-hand motif [structural motif]
      cl25352
      Location:522 → 662
      EFh_PEF; The penta-EF hand (PEF) family

    RNA

    1. XR_005858269.2 RNA Sequence

    2. XR_005858268.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      40055577..40083826
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040667890.2 → XP_040523824.1  calpain-9 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y1R4
      Conserved Domains (3) summary
      smart00230
      Location:29 → 342
      CysPc; Calpain-like thiol protease family
      cd00214
      Location:347 → 496
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
      cd16192
      Location:522 → 690
      EFh_PEF_CAPN9; Penta-EF hand, calcium binding motifs, found in calpain-9 (CAPN9)

    2. XM_040667889.2 → XP_040523823.1  calpain-9 isoform X1

      Conserved Domains (4) summary
      smart00230
      Location:29 → 342
      CysPc; Calpain-like thiol protease family
      cd00214
      Location:347 → 496
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
      cd15897
      Location:522 → 550
      EFh_PEF; EF-hand motif [structural motif]
      cl25352
      Location:522 → 662
      EFh_PEF; The penta-EF hand (PEF) family
    Nucleotide Protein Strain
    Heading Accession and Version

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