nfil3-6 nuclear factor, interleukin 3 regulated, member 6 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nfil3-6provided by ZNC
Official Full Name: nuclear factor, interleukin 3 regulated, member 6provided by ZNC
Primary source: ZFIN:ZDB-GENE-040704-63
See related: Ensembl:ENSDARG00000087188 AllianceGenome:ZFIN:ZDB-GENE-040704-63
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: E4BP4-6; zgc:77060; zgc:103704
Summary: Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within circadian regulation of gene expression and regulation of transcription, DNA-templated. Is expressed in epiphysis; retina; retinal inner nuclear layer; and retinal photoreceptor layer. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 3

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (14097540..14103531, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (13947694..13953685, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within circadian regulation of gene expression	IDA Inferred from Direct Assay more info	PubMed
involved_in circadian rhythm	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within regulation of DNA-templated transcription	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: nuclear factor, interleukin 3 regulated, member 6

Names: E4 binding protein 4-6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001002218.1 → NP_001002218.1 nuclear factor, interleukin 3 regulated, member 6

See identical proteins and their annotated locations for NP_001002218.1

Status: PROVISIONAL

Source sequence(s)

BC073175

UniProtKB/TrEMBL

Q6GPG2

Related

ENSDARP00000111381.1, ENSDART00000127604.3

Conserved Domains (1) summary

cd14694
Location:53 → 112

bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain