AKR1C3l1 aldo-keto reductase family 1 member C3-like 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: AKR1C3l1provided by RGD
Official Full Name: aldo-keto reductase family 1 member C3-like 1provided by RGD
Primary source: RGD:1564865
See related: Ensembl:ENSRNOG00000038361 AllianceGenome:RGD:1564865
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1309566; RGD1564865
Summary: Predicted to enable several functions, including oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; and trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity. Predicted to be involved in several processes, including glycoside metabolic process; monocarboxylic acid metabolic process; and retinal metabolic process. Predicted to be active in cytosol. [provided by Alliance of Genome Resources, Apr 2022]
Expression: Restricted expression toward (RPKM 901.5) See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 17q12.2

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	17	NC_086035.1 (70745496..70791411)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	17	NC_051352.1 (65847580..65881488)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	17	NC_005116.4 (69468427..69497132)

Chromosome 17 - NC_086035.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Characterization of aldo-keto reductase 1C subfamily members encoded in two rat genes (akr1c19 and RGD1564865). Relationship to 9-hydroxyprostaglandin dehydrogenase.
Title: Characterization of aldo-keto reductase 1C subfamily members encoded in two rat genes (akr1c19 and RGD1564865). Relationship to 9-hydroxyprostaglandin dehydrogenase.
Ethylene glycol monomethyl ether, sulpiride, or atrazine downregulated the luteolytic gene, 20-alpha-Hydroxysteroid Dehydrogenase.
Title: Differential stimulation pathways of progesterone secretion from newly formed corpora lutea in rats treated with ethylene glycol monomethyl ether, sulpiride, or atrazine.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables aldose reductase (NADPH) activity	IBA Inferred from Biological aspect of Ancestor more info
enables androsterone dehydrogenase activity	IBA Inferred from Biological aspect of Ancestor more info
enables bile acid binding	IBA Inferred from Biological aspect of Ancestor more info
enables ketosteroid monooxygenase activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in daunorubicin metabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in doxorubicin metabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in progesterone metabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in prostaglandin metabolic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: aldo-keto reductase family 1 member C3-like 1

Names: 20-alpha-hydroxysteroid dehydrogenase-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001164396.1 → NP_001157868.1 aldo-keto reductase family 1 member C3-like 1

Status: PROVISIONAL

Source sequence(s)

JAXUCZ010000017

UniProtKB/TrEMBL

A0A8I5ZMV2, A0A8I6ADN4

Related

ENSRNOP00000079498.1, ENSRNOT00000096835.1

Conserved Domains (2) summary

COG0656
Location:8 → 311

ARA1; Aldo/keto reductase, related to diketogulonate reductase [Secondary metabolites biosynthesis, transport and catabolism]

COG0667
Location:19 → 297

Tas; Predicted oxidoreductase (related to aryl-alcohol dehydrogenase) [General function prediction only]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086035.1 Reference GRCr8

Range

70745496..70791411

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063276697.1 → XP_063132767.1 aldo-keto reductase family 1 member C3-like 1 isoform X1

UniProtKB/TrEMBL

F1LU12
XM_063276698.1 → XP_063132768.1 aldo-keto reductase family 1 member C3-like 1 isoform X2
XM_063276699.1 → XP_063132769.1 aldo-keto reductase family 1 member C3-like 1 isoform X3

UniProtKB/TrEMBL

A0A8I6AN46
XM_063276700.1 → XP_063132770.1 aldo-keto reductase family 1 member C3-like 1 isoform X4