SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 [Gallus gallus (chicken)] - Gene

Summary

Official Symbol: SNRNP40provided by CGNC
Official Full Name: small nuclear ribonucleoprotein U5 subunit 40provided by CGNC
Primary source: CGNC:93688
See related: Ensembl:ENSGALG00010012922
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: WDR57
Annotation information: Annotation category: suggests misassembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 23

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	23	NC_052554.1 (941933..952689, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	23	NC_052595.1 (708538..719308, complement)

Chromosome 23 - NC_052554.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: U5 small nuclear ribonucleoprotein 40 kDa protein

Names: WD repeat domain 57 (U5 snRNP specific); small nuclear ribonucleoprotein 40kDa (U5)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001006308.1 → NP_001006308.1 U5 small nuclear ribonucleoprotein 40 kDa protein

See identical proteins and their annotated locations for NP_001006308.1

Status: PROVISIONAL

Source sequence(s)

AJ719967

UniProtKB/TrEMBL

A0A8V0YPG3, Q5ZKW7

Related

ENSGALP00010018038.1, ENSGALT00010031032.1

Conserved Domains (3) summary

COG2319
Location:91 → 382

WD40; WD40 repeat [General function prediction only]

cd00200
Location:93 → 382

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:101 → 138

7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052554.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

941933..952689 complement

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GenBank, FASTA, Sequence Viewer (Graphics)