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    NUP58 nucleoporin 58 [ Canis lupus familiaris (dog) ]

    Gene ID: 477334, updated on 5-Mar-2024

    Summary

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    Official Symbol
    NUP58provided by VGNC
    Official Full Name
    nucleoporin 58provided by VGNC
    Primary source
    VGNC:VGNC:44058
    See related
    Ensembl:ENSCAFG00845017878
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    NUPL1
    Orthologs
    human mouse all
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    Genomic context

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    See NUP58 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (14236442..14289531, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (14185956..14238412, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (14169367..14222519, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (14118744..14171646, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (14120919..14173588, complement)

    Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 8A2 Neighboring gene uncharacterized LOC119865915 Neighboring gene uncharacterized LOC111092273 Neighboring gene U6 snRNA-associated Sm-like protein LSm3 Neighboring gene myotubularin related protein 6 Neighboring gene APC membrane recruitment protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleocytoplasmic transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleoporin p58/p45
    Names
    nucleoporin like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051829.1 Reference ROS_Cfam_1.0

      Range
      14236442..14289531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038435052.1 → XP_038290980.1  nucleoporin p58/p45 isoform X3

      UniProtKB/TrEMBL
      A0A8C0LHX9, A0A8C0TMS2, A0A8I3P4N4
      Related
      ENSCAFP00845024774.1, ENSCAFT00845031652.1
      Conserved Domains (1) summary
      pfam15967
      Location:3 → 553
      Nucleoporin_FG2; Nucleoporin FG repeated region

    2. XM_038435049.1 → XP_038290977.1  nucleoporin p58/p45 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MZV9, A0A8I3NVI2, A0A8I3P537, A0A8P0N9J9
      Related
      ENSCAFP00845024894.1, ENSCAFT00845031818.1
      Conserved Domains (1) summary
      pfam15967
      Location:3 → 599
      Nucleoporin_FG2; Nucleoporin FG repeated region

    3. XM_038435051.1 → XP_038290979.1  nucleoporin p58/p45 isoform X2

      UniProtKB/TrEMBL
      A0A8C0LNE7, A0A8C0N751, A0A8I3S315
      Related
      ENSCAFP00845025031.1, ENSCAFT00845032007.1
      Conserved Domains (1) summary
      pfam15967
      Location:3 → 587
      Nucleoporin_FG2; Nucleoporin FG repeated region

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049285.1 Alternate UMICH_Zoey_3.1

      Range
      14118744..14171646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038510035.1 → XP_038365963.1  nucleoporin p58/p45 isoform X3

      Conserved Domains (1) summary
      pfam15967
      Location:3 → 553
      Nucleoporin_FG2; Nucleoporin FG repeated region

    2. XM_038510033.1 → XP_038365961.1  nucleoporin p58/p45 isoform X1

      Conserved Domains (1) summary
      pfam15967
      Location:3 → 599
      Nucleoporin_FG2; Nucleoporin FG repeated region

    3. XM_038510034.1 → XP_038365962.1  nucleoporin p58/p45 isoform X2

      Conserved Domains (1) summary
      pfam15967
      Location:3 → 587
      Nucleoporin_FG2; Nucleoporin FG repeated region

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

      Range
      14120919..14173588 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038637760.1 → XP_038493688.1  nucleoporin p58/p45 isoform X3

      Conserved Domains (1) summary
      pfam15967
      Location:3 → 553
      Nucleoporin_FG2; Nucleoporin FG repeated region

    2. XM_038637758.1 → XP_038493686.1  nucleoporin p58/p45 isoform X1

      Conserved Domains (1) summary
      pfam15967
      Location:3 → 599
      Nucleoporin_FG2; Nucleoporin FG repeated region

    3. XM_038637759.1 → XP_038493687.1  nucleoporin p58/p45 isoform X2

      Conserved Domains (1) summary
      pfam15967
      Location:3 → 587
      Nucleoporin_FG2; Nucleoporin FG repeated region

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

      Range
      14169367..14222519 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038573461.1 → XP_038429389.1  nucleoporin p58/p45 isoform X3

      UniProtKB/TrEMBL
      A0A8C0LHX9, A0A8C0TMS2, A0A8I3P4N4
      Conserved Domains (1) summary
      pfam15967
      Location:3 → 553
      Nucleoporin_FG2; Nucleoporin FG repeated region

    2. XM_038573459.1 → XP_038429387.1  nucleoporin p58/p45 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MZV9, A0A8I3NVI2, A0A8I3P537, A0A8P0N9J9
      Conserved Domains (1) summary
      pfam15967
      Location:3 → 599
      Nucleoporin_FG2; Nucleoporin FG repeated region

    3. XM_038573460.1 → XP_038429388.1  nucleoporin p58/p45 isoform X2

      UniProtKB/TrEMBL
      A0A8C0LNE7, A0A8C0N751, A0A8I3S315
      Conserved Domains (1) summary
      pfam15967
      Location:3 → 587
      Nucleoporin_FG2; Nucleoporin FG repeated region

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      14185956..14238412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005635541.4 → XP_005635598.2  nucleoporin p58/p45 isoform X3

      UniProtKB/TrEMBL
      A0A8C0LHX9, A0A8C0TMS2, A0A8I3P4N4
      Conserved Domains (1) summary
      pfam15967
      Location:3 → 553
      Nucleoporin_FG2; Nucleoporin FG repeated region

    2. XM_534528.7 → XP_534528.3  nucleoporin p58/p45 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MZV9, A0A8I3NVI2, A0A8I3P537, A0A8P0N9J9
      Conserved Domains (1) summary
      pfam15967
      Location:3 → 599
      Nucleoporin_FG2; Nucleoporin FG repeated region

    3. XM_003433299.5 → XP_003433347.2  nucleoporin p58/p45 isoform X2

      UniProtKB/TrEMBL
      A0A8C0LNE7, A0A8C0N751, A0A8I3S315
      Conserved Domains (1) summary
      pfam15967
      Location:3 → 587
      Nucleoporin_FG2; Nucleoporin FG repeated region
    Nucleotide Protein
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