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    HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 486330, updated on 5-Mar-2024

    Summary

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    Official Symbol
    HPS4provided by VGNC
    Official Full Name
    HPS4 biogenesis of lysosomal organelles complex 3 subunit 2provided by VGNC
    Primary source
    VGNC:VGNC:41776
    See related
    Ensembl:ENSCAFG00845029576
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See HPS4 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (20495535..20522930, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (19995923..20023346, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (20537450..20564852, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (20212135..20239523, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (20468000..20495466, complement)

    Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene seizure related 6 homolog like Neighboring gene uncharacterized LOC111092535 Neighboring gene aspartate beta-hydroxylase domain containing 2 Neighboring gene uncharacterized LOC102152804 Neighboring gene SRR1 domain containing Neighboring gene tuftelin interacting protein 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Hermansky-Pudlak syndrome 4 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051830.1 Reference ROS_Cfam_1.0

      Range
      20495535..20522930 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038437098.1 → XP_038293026.1  Hermansky-Pudlak syndrome 4 protein isoform X8

      UniProtKB/TrEMBL
      A0A8I3S784
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 45
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:591 → 689
      Intu_longin_3; Intu longin-like domain 3

    2. XM_038437096.1 → XP_038293024.1  Hermansky-Pudlak syndrome 4 protein isoform X6

      UniProtKB/TrEMBL
      A0A8C0Z6Z8
      Related
      ENSCAFP00845041175.1, ENSCAFT00845052481.1
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 121
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:605 → 703
      Intu_longin_3; Intu longin-like domain 3

    3. XM_038437092.1 → XP_038293020.1  Hermansky-Pudlak syndrome 4 protein isoform X2

      UniProtKB/TrEMBL
      A0A8I3Q0N5, A0A8I3S784
      Related
      ENSCAFP00845041122.1, ENSCAFT00845052416.1
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 121
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:639 → 737
      Intu_longin_3; Intu longin-like domain 3

    4. XM_038437100.1 → XP_038293028.1  Hermansky-Pudlak syndrome 4 protein isoform X10

      UniProtKB/TrEMBL
      A0A8C0TX07, A0A8P0P0U9
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:531 → 629
      Intu_longin_3; Intu longin-like domain 3

    5. XM_038437099.1 → XP_038293027.1  Hermansky-Pudlak syndrome 4 protein isoform X9

      UniProtKB/TrEMBL
      A0A8I3S784
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:571 → 669
      Intu_longin_3; Intu longin-like domain 3

    6. XM_038437095.1 → XP_038293023.1  Hermansky-Pudlak syndrome 4 protein isoform X5

      UniProtKB/TrEMBL
      A0A8C0TX07, A0A8P0P0U9
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:612 → 710
      Intu_longin_3; Intu longin-like domain 3

    7. XM_038437094.1 → XP_038293022.1  Hermansky-Pudlak syndrome 4 protein isoform X4

      UniProtKB/TrEMBL
      A0A8C0Z6Z8
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:618 → 716
      Intu_longin_3; Intu longin-like domain 3

    8. XM_038437093.1 → XP_038293021.1  Hermansky-Pudlak syndrome 4 protein isoform X3

      UniProtKB/TrEMBL
      A0A8I3S784
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:652 → 710
      Intu_longin_3; Intu longin-like domain 3

    9. XM_038437089.1 → XP_038293017.1  Hermansky-Pudlak syndrome 4 protein isoform X1

      UniProtKB/TrEMBL
      A0A8I3S784
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:652 → 750
      Intu_longin_3; Intu longin-like domain 3

    10. XM_038437090.1 → XP_038293018.1  Hermansky-Pudlak syndrome 4 protein isoform X1

      UniProtKB/TrEMBL
      A0A8I3S784
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:652 → 750
      Intu_longin_3; Intu longin-like domain 3

    11. XM_038437091.1 → XP_038293019.1  Hermansky-Pudlak syndrome 4 protein isoform X1

      UniProtKB/TrEMBL
      A0A8I3S784
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:652 → 750
      Intu_longin_3; Intu longin-like domain 3

    12. XM_038437097.1 → XP_038293025.1  Hermansky-Pudlak syndrome 4 protein isoform X7

      UniProtKB/TrEMBL
      A0A8I3S784
      Related
      ENSCAFP00845041136.1, ENSCAFT00845052434.1
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:652 → 702
      Intu_longin_3; Intu longin-like domain 3

    13. XM_038437103.1 → XP_038293031.1  Hermansky-Pudlak syndrome 4 protein isoform X12

      UniProtKB/TrEMBL
      A0A8I3Q802
      Conserved Domains (1) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4

    14. XM_038437102.1 → XP_038293030.1  Hermansky-Pudlak syndrome 4 protein isoform X11

      UniProtKB/TrEMBL
      A0A8I3Q802
      Conserved Domains (1) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049286.1 Alternate UMICH_Zoey_3.1

      Range
      20212135..20239523 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038511998.1 → XP_038367926.1  Hermansky-Pudlak syndrome 4 protein isoform X8

    2. XM_038511996.1 → XP_038367924.1  Hermansky-Pudlak syndrome 4 protein isoform X6

    3. XM_038511992.1 → XP_038367920.1  Hermansky-Pudlak syndrome 4 protein isoform X2

    4. XM_038512000.1 → XP_038367928.1  Hermansky-Pudlak syndrome 4 protein isoform X10

      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:531 → 629
      Intu_longin_3; Intu longin-like domain 3

    5. XM_038511999.1 → XP_038367927.1  Hermansky-Pudlak syndrome 4 protein isoform X9

    6. XM_038511995.1 → XP_038367923.1  Hermansky-Pudlak syndrome 4 protein isoform X5

      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:612 → 710
      Intu_longin_3; Intu longin-like domain 3

    7. XM_038511994.1 → XP_038367922.1  Hermansky-Pudlak syndrome 4 protein isoform X4

    8. XM_038511993.1 → XP_038367921.1  Hermansky-Pudlak syndrome 4 protein isoform X3

    9. XM_038511989.1 → XP_038367917.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    10. XM_038511990.1 → XP_038367918.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    11. XM_038511991.1 → XP_038367919.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    12. XM_038511997.1 → XP_038367925.1  Hermansky-Pudlak syndrome 4 protein isoform X7

    13. XM_038512002.1 → XP_038367930.1  Hermansky-Pudlak syndrome 4 protein isoform X12

    14. XM_038512001.1 → XP_038367929.1  Hermansky-Pudlak syndrome 4 protein isoform X11

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

      Range
      20468000..20495466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038639698.1 → XP_038495626.1  Hermansky-Pudlak syndrome 4 protein isoform X8

    2. XM_038639696.1 → XP_038495624.1  Hermansky-Pudlak syndrome 4 protein isoform X6

    3. XM_038639692.1 → XP_038495620.1  Hermansky-Pudlak syndrome 4 protein isoform X2

    4. XM_038639700.1 → XP_038495628.1  Hermansky-Pudlak syndrome 4 protein isoform X10

      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:531 → 629
      Intu_longin_3; Intu longin-like domain 3

    5. XM_038639699.1 → XP_038495627.1  Hermansky-Pudlak syndrome 4 protein isoform X9

    6. XM_038639695.1 → XP_038495623.1  Hermansky-Pudlak syndrome 4 protein isoform X5

      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:612 → 710
      Intu_longin_3; Intu longin-like domain 3

    7. XM_038639694.1 → XP_038495622.1  Hermansky-Pudlak syndrome 4 protein isoform X4

    8. XM_038639693.1 → XP_038495621.1  Hermansky-Pudlak syndrome 4 protein isoform X3

    9. XM_038639689.1 → XP_038495617.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    10. XM_038639690.1 → XP_038495618.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    11. XM_038639691.1 → XP_038495619.1  Hermansky-Pudlak syndrome 4 protein isoform X1

    12. XM_038639697.1 → XP_038495625.1  Hermansky-Pudlak syndrome 4 protein isoform X7

    13. XM_038639702.1 → XP_038495630.1  Hermansky-Pudlak syndrome 4 protein isoform X12

    14. XM_038639701.1 → XP_038495629.1  Hermansky-Pudlak syndrome 4 protein isoform X11

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

      Range
      20537450..20564852 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038575504.1 → XP_038431432.1  Hermansky-Pudlak syndrome 4 protein isoform X8

      UniProtKB/TrEMBL
      A0A8C0Z6Z8

    2. XM_038575502.1 → XP_038431430.1  Hermansky-Pudlak syndrome 4 protein isoform X6

      UniProtKB/TrEMBL
      A0A8C0Z6Z8

    3. XM_038575498.1 → XP_038431426.1  Hermansky-Pudlak syndrome 4 protein isoform X2

      UniProtKB/TrEMBL
      A0A8C0Z6Z8

    4. XM_038575506.1 → XP_038431434.1  Hermansky-Pudlak syndrome 4 protein isoform X10

      UniProtKB/TrEMBL
      A0A8C0TX07, A0A8P0P0U9
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:531 → 629
      Intu_longin_3; Intu longin-like domain 3

    5. XM_038575505.1 → XP_038431433.1  Hermansky-Pudlak syndrome 4 protein isoform X9

      UniProtKB/TrEMBL
      A0A8C0Z6Z8

    6. XM_038575501.1 → XP_038431429.1  Hermansky-Pudlak syndrome 4 protein isoform X5

      UniProtKB/TrEMBL
      A0A8C0TX07, A0A8P0P0U9
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:612 → 710
      Intu_longin_3; Intu longin-like domain 3

    7. XM_038575500.1 → XP_038431428.1  Hermansky-Pudlak syndrome 4 protein isoform X4

      UniProtKB/TrEMBL
      A0A8C0Z6Z8

    8. XM_038575499.1 → XP_038431427.1  Hermansky-Pudlak syndrome 4 protein isoform X3

      UniProtKB/TrEMBL
      A0A8C0Z701

    9. XM_038575495.1 → XP_038431423.1  Hermansky-Pudlak syndrome 4 protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0Z6Z8

    10. XM_038575496.1 → XP_038431424.1  Hermansky-Pudlak syndrome 4 protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0Z6Z8

    11. XM_038575497.1 → XP_038431425.1  Hermansky-Pudlak syndrome 4 protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0Z6Z8

    12. XM_038575503.1 → XP_038431431.1  Hermansky-Pudlak syndrome 4 protein isoform X7

      UniProtKB/TrEMBL
      A0A8C0Z701

    13. XM_038575508.1 → XP_038431436.1  Hermansky-Pudlak syndrome 4 protein isoform X12

      UniProtKB/TrEMBL
      A0A8I3Q802

    14. XM_038575507.1 → XP_038431435.1  Hermansky-Pudlak syndrome 4 protein isoform X11

      UniProtKB/TrEMBL
      A0A8I3Q802

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      19995923..20023346 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038459072.1 → XP_038315000.1  Hermansky-Pudlak syndrome 4 protein isoform X8

      UniProtKB/TrEMBL
      A0A8C0Z6Z8
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 45
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:591 → 689
      Intu_longin_3; Intu longin-like domain 3

    2. XM_038459070.1 → XP_038314998.1  Hermansky-Pudlak syndrome 4 protein isoform X6

      UniProtKB/TrEMBL
      A0A8C0R5X6, A0A8C0Z6Z8, A0A8P0TG62
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 121
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:605 → 703
      Intu_longin_3; Intu longin-like domain 3

    3. XM_038459066.1 → XP_038314994.1  Hermansky-Pudlak syndrome 4 protein isoform X2

      UniProtKB/TrEMBL
      A0A8P0P7V1, A0A8P0SGI3
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 121
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:639 → 737
      Intu_longin_3; Intu longin-like domain 3

    4. XM_038459074.1 → XP_038315002.1  Hermansky-Pudlak syndrome 4 protein isoform X10

      UniProtKB/TrEMBL
      A0A8C0TX07, A0A8P0P0U9
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:531 → 629
      Intu_longin_3; Intu longin-like domain 3

    5. XM_038459073.1 → XP_038315001.1  Hermansky-Pudlak syndrome 4 protein isoform X9

      UniProtKB/TrEMBL
      A0A8C0Z6Z8
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:571 → 669
      Intu_longin_3; Intu longin-like domain 3

    6. XM_038459069.1 → XP_038314997.1  Hermansky-Pudlak syndrome 4 protein isoform X5

      UniProtKB/TrEMBL
      A0A8C0TX07, A0A8P0P0U9
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:612 → 710
      Intu_longin_3; Intu longin-like domain 3

    7. XM_038459068.1 → XP_038314996.1  Hermansky-Pudlak syndrome 4 protein isoform X4

      UniProtKB/TrEMBL
      A0A8C0Z6Z8
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:618 → 716
      Intu_longin_3; Intu longin-like domain 3

    8. XM_038459067.1 → XP_038314995.1  Hermansky-Pudlak syndrome 4 protein isoform X3

      UniProtKB/TrEMBL
      A0A8P0P7V1
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:652 → 710
      Intu_longin_3; Intu longin-like domain 3

    9. XM_038459063.1 → XP_038314991.1  Hermansky-Pudlak syndrome 4 protein isoform X1

      UniProtKB/TrEMBL
      A0A8P0P7V1
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:652 → 750
      Intu_longin_3; Intu longin-like domain 3

    10. XM_038459064.1 → XP_038314992.1  Hermansky-Pudlak syndrome 4 protein isoform X1

      UniProtKB/TrEMBL
      A0A8P0P7V1
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:652 → 750
      Intu_longin_3; Intu longin-like domain 3

    11. XM_038459065.1 → XP_038314993.1  Hermansky-Pudlak syndrome 4 protein isoform X1

      UniProtKB/TrEMBL
      A0A8P0P7V1
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:652 → 750
      Intu_longin_3; Intu longin-like domain 3

    12. XM_038459071.1 → XP_038314999.1  Hermansky-Pudlak syndrome 4 protein isoform X7

      UniProtKB/TrEMBL
      A0A8P0P7V1
      Conserved Domains (2) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
      pfam19033
      Location:652 → 702
      Intu_longin_3; Intu longin-like domain 3

    13. XM_038459076.1 → XP_038315004.1  Hermansky-Pudlak syndrome 4 protein isoform X12

      UniProtKB/TrEMBL
      A0A8I3Q802
      Conserved Domains (1) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4

    14. XM_038459075.1 → XP_038315003.1  Hermansky-Pudlak syndrome 4 protein isoform X11

      UniProtKB/TrEMBL
      A0A8I3Q802
      Conserved Domains (1) summary
      pfam19031
      Location:15 → 134
      Intu_longin_1; First Longin domain of INTU, CCZ1 and HPS4
    Nucleotide Protein
    Heading Accession and Version

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