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    SEC23A SEC23 homolog A, COPII coat complex component [ Canis lupus familiaris (dog) ]

    Gene ID: 480295, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SEC23Aprovided by VGNC
    Official Full Name
    SEC23 homolog A, COPII coat complex componentprovided by VGNC
    Primary source
    VGNC:VGNC:45969
    See related
    Ensembl:ENSCAFG00845003250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SEC23A in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (17328852..17414117, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (17017543..17103065, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (17374646..17460016, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (17016525..17101723, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (17087718..17173549, complement)

    Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit DAPIT, mitochondrial-like Neighboring gene small nucleolar RNA SNORA5 Neighboring gene uncharacterized LOC111097005 Neighboring gene uncharacterized LOC111097006

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle budding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in COPII-coated vesicle cargo loading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein transport protein Sec23A
    Names
    Sec23 homolog A, coat complex II component

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051812.1 Reference ROS_Cfam_1.0

      Range
      17328852..17414117 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038673489.1 → XP_038529417.1  protein transport protein Sec23A isoform X4

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 710
      PLN00162; transport protein sec23; Provisional

    2. XM_038673485.1 → XP_038529413.1  protein transport protein Sec23A isoform X5

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 737
      PLN00162; transport protein sec23; Provisional

    3. XM_038673486.1 → XP_038529414.1  protein transport protein Sec23A isoform X5

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 737
      PLN00162; transport protein sec23; Provisional

    4. XM_038673490.1 → XP_038529418.1  protein transport protein Sec23A isoform X1

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 735
      PLN00162; transport protein sec23; Provisional

    5. XM_038673488.1 → XP_038529416.1  protein transport protein Sec23A isoform X3

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 710
      PLN00162; transport protein sec23; Provisional

    6. XM_038673487.1 → XP_038529415.1  protein transport protein Sec23A isoform X2

      UniProtKB/TrEMBL
      A0A8C0M500, A0A8C0M9S2, A0A8I3RR85
      Related
      ENSCAFP00845004549.1, ENSCAFT00845005739.1
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 763
      PLN00162; transport protein sec23; Provisional

    RNA

    1. XR_005430908.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049268.1 Alternate UMICH_Zoey_3.1

      Range
      17016525..17101723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038483109.1 → XP_038339037.1  protein transport protein Sec23A isoform X4

      Conserved Domains (1) summary
      PLN00162
      Location:12 → 710
      PLN00162; transport protein sec23; Provisional

    2. XM_038483105.1 → XP_038339033.1  protein transport protein Sec23A isoform X6

      Conserved Domains (1) summary
      PLN00162
      Location:12 → 737
      PLN00162; transport protein sec23; Provisional

    3. XM_038483106.1 → XP_038339034.1  protein transport protein Sec23A isoform X6

      Conserved Domains (1) summary
      PLN00162
      Location:12 → 737
      PLN00162; transport protein sec23; Provisional

    4. XM_038483108.1 → XP_038339036.1  protein transport protein Sec23A isoform X3

      Conserved Domains (1) summary
      PLN00162
      Location:12 → 710
      PLN00162; transport protein sec23; Provisional

    5. XM_038483107.1 → XP_038339035.1  protein transport protein Sec23A isoform X2

      Conserved Domains (1) summary
      PLN00162
      Location:12 → 763
      PLN00162; transport protein sec23; Provisional

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

      Range
      17087718..17173549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038608680.1 → XP_038464608.1  protein transport protein Sec23A isoform X4

      Conserved Domains (1) summary
      PLN00162
      Location:12 → 710
      PLN00162; transport protein sec23; Provisional

    2. XM_038608677.1 → XP_038464605.1  protein transport protein Sec23A isoform X7

      Conserved Domains (1) summary
      PLN00162
      Location:12 → 737
      PLN00162; transport protein sec23; Provisional

    3. XM_038608679.1 → XP_038464607.1  protein transport protein Sec23A isoform X3

      Conserved Domains (1) summary
      PLN00162
      Location:12 → 710
      PLN00162; transport protein sec23; Provisional

    4. XM_038608678.1 → XP_038464606.1  protein transport protein Sec23A isoform X2

      Conserved Domains (1) summary
      PLN00162
      Location:12 → 763
      PLN00162; transport protein sec23; Provisional

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

      Range
      17374646..17460016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038544559.1 → XP_038400487.1  protein transport protein Sec23A isoform X4

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 710
      PLN00162; transport protein sec23; Provisional

    2. XM_038544555.1 → XP_038400483.1  protein transport protein Sec23A isoform X8

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 737
      PLN00162; transport protein sec23; Provisional

    3. XM_038544556.1 → XP_038400484.1  protein transport protein Sec23A isoform X8

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 737
      PLN00162; transport protein sec23; Provisional

    4. XM_038544560.1 → XP_038400488.1  protein transport protein Sec23A isoform X1

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 735
      PLN00162; transport protein sec23; Provisional

    5. XM_038544558.1 → XP_038400486.1  protein transport protein Sec23A isoform X3

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 710
      PLN00162; transport protein sec23; Provisional

    6. XM_038544557.1 → XP_038400485.1  protein transport protein Sec23A isoform X2

      UniProtKB/TrEMBL
      A0A8C0M500, A0A8C0M9S2, A0A8I3RR85
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 763
      PLN00162; transport protein sec23; Provisional

    RNA

    1. XR_005363161.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      17017543..17103065 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038586043.1 → XP_038441971.1  protein transport protein Sec23A isoform X4

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 710
      PLN00162; transport protein sec23; Provisional

    2. XM_022421948.2 → XP_022277656.1  protein transport protein Sec23A isoform X9

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 737
      PLN00162; transport protein sec23; Provisional

    3. XM_038586016.1 → XP_038441944.1  protein transport protein Sec23A isoform X9

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 737
      PLN00162; transport protein sec23; Provisional

    4. XM_038586051.1 → XP_038441979.1  protein transport protein Sec23A isoform X1

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 735
      PLN00162; transport protein sec23; Provisional

    5. XM_038586036.1 → XP_038441964.1  protein transport protein Sec23A isoform X3

      UniProtKB/TrEMBL
      A0A8C0M500
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 710
      PLN00162; transport protein sec23; Provisional

    6. XM_845739.6 → XP_850832.3  protein transport protein Sec23A isoform X2

      See identical proteins and their annotated locations for XP_850832.3

      UniProtKB/TrEMBL
      A0A8C0M500, A0A8C0M9S2, A0A8I3RR85
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 763
      PLN00162; transport protein sec23; Provisional

    RNA

    1. XR_005385591.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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