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    SLC3A1 solute carrier family 3 member 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 403700, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SLC3A1provided by VGNC
    Official Full Name
    solute carrier family 3 member 1provided by VGNC
    Primary source
    VGNC:VGNC:46409
    See related
    Ensembl:ENSCAFG00845026546
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SLC3A1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (47580243..47618780)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (46562101..46597364)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (47760850..47796315)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (47287361..47322625)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (47578444..47613677)

    Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S19-like Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1B Neighboring gene prolyl endopeptidase like Neighboring gene calmodulin-lysine N-methyltransferase Neighboring gene uncharacterized LOC111097845

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SLC7A9 cDNA cloning and mutational analysis of SLC3A1 and SLC7A9 in canine cystinuria. Harnevik L, et al. Mamm Genome, 2006 Jul. PMID 16845473
    2. Canine cystinuria: polymorphism in the canine SLC3A1 gene and identification of a nonsense mutation in cystinuric Newfoundland dogs. Henthorn PS, et al. Hum Genet, 2000 Oct. PMID 11129328

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid transporter heavy chain SLC3A1; neutral and basic amino acid transport protein rBAT
    Names
    amino acid transporter SLC3A1
    solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003109.1 → NP_001003109.1  amino acid transporter heavy chain SLC3A1

      See identical proteins and their annotated locations for NP_001003109.1

      Status: PROVISIONAL

      Source sequence(s)
      AF187966
      UniProtKB/TrEMBL
      A0A8P0S8B4, Q9GKM3
      Related
      ENSCAFP00845036720.1, ENSCAFT00845046819.1
      Conserved Domains (3) summary
      cd11359
      Location:131 → 584
      AmyAc_SLC3A1; Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins
      TIGR02403
      Location:132 → 615
      trehalose_treC; alpha,alpha-phosphotrehalase
      pfam16028
      Location:80 → 138
      SLC3A2_N; Solute carrier family 3 member 2 N-terminus

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051814.1 Reference ROS_Cfam_1.0

      Range
      47580243..47618780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038678763.1 → XP_038534691.1  neutral and basic amino acid transport protein rBAT isoform X1

      UniProtKB/TrEMBL
      A0A8P0T160
      Conserved Domains (2) summary
      cd11359
      Location:129 → 553
      AmyAc_SLC3A1; Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins
      pfam16028
      Location:78 → 137
      SLC3A2_N; Solute carrier family 3 member 2 N-terminus

    2. XM_038678762.1 → XP_038534690.1  neutral and basic amino acid transport protein rBAT isoform X1

      UniProtKB/TrEMBL
      A0A8P0T160
      Conserved Domains (2) summary
      cd11359
      Location:129 → 553
      AmyAc_SLC3A1; Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins
      pfam16028
      Location:78 → 137
      SLC3A2_N; Solute carrier family 3 member 2 N-terminus

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049270.1 Alternate UMICH_Zoey_3.1

      Range
      47287361..47322625
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

      Range
      47578444..47613677
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

      Range
      47760850..47796315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      46562101..46597364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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