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    LOC485141 tripartite motif-containing protein 77-like [ Canis lupus familiaris (dog) ]

    Gene ID: 485141, updated on 22-Jan-2024

    Summary

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    Gene symbol
    LOC485141
    Gene description
    tripartite motif-containing protein 77-like
    See related
    Ensembl:ENSCAFG00845024925
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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    Genomic context

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    See LOC485141 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (10478284..10484020, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (10179428..10185163)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (10382061..10387785, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (10272960..10278695, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (10332017..10337559, complement)

    Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene N-acetylated alpha-linked acidic dipeptidase 2 Neighboring gene uncharacterized LOC119864954 Neighboring gene tripartite motif-containing protein 43-like Neighboring gene ragulator complex protein LAMTOR5-like Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 77-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051825.1 Reference ROS_Cfam_1.0

      Range
      10478284..10484020 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038429638.1 → XP_038285566.1  tripartite motif-containing protein 77-like

      UniProtKB/TrEMBL
      A0A8C0KWN6, A0A8C0R2M8, A0A8C0TA24, A0A8I3PTG0, A0A8I3PXD1
      Related
      ENSCAFP00845034587.1, ENSCAFT00845044139.1
      Conserved Domains (4) summary
      cd00162
      Location:15 → 55
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:87 → 139
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:285 → 446
      SPRY; SPRY domain
      cl17238
      Location:12 → 56
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049281.1 Alternate UMICH_Zoey_3.1

      Range
      10272960..10278695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038506100.1 → XP_038362028.1  tripartite motif-containing protein 77-like

      Conserved Domains (4) summary
      cd00162
      Location:15 → 55
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:87 → 139
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:285 → 446
      SPRY; SPRY domain
      cl17238
      Location:12 → 56
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

      Range
      10332017..10337559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038632315.1 → XP_038488243.1  tripartite motif-containing protein 77-like

      Conserved Domains (4) summary
      cd00162
      Location:15 → 55
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:87 → 139
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:285 → 446
      SPRY; SPRY domain
      cl17238
      Location:12 → 56
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

      Range
      10382061..10387785 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038569337.1 → XP_038425265.1  tripartite motif-containing protein 77-like

      UniProtKB/TrEMBL
      A0A8C0KWN6, A0A8C0N681, A0A8I3PTG0
      Conserved Domains (4) summary
      cd00162
      Location:15 → 55
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:87 → 139
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:285 → 446
      SPRY; SPRY domain
      cl17238
      Location:12 → 56
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      10179428..10185163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_542259.6 → XP_542259.5  tripartite motif-containing protein 77-like

      UniProtKB/TrEMBL
      A0A8C0KWN6, A0A8C0R2M8, A0A8C0TA24, A0A8I3PTG0, A0A8I3PXD1
      Conserved Domains (4) summary
      cd00162
      Location:15 → 55
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:87 → 139
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:285 → 446
      SPRY; SPRY domain
      cl17238
      Location:12 → 56
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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