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    TAGLN transgelin [ Canis lupus familiaris (dog) ]

    Gene ID: 479424, updated on 5-Mar-2024

    Summary

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    Official Symbol
    TAGLNprovided by VGNC
    Official Full Name
    transgelinprovided by VGNC
    Primary source
    VGNC:VGNC:47093
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (16334629..16339831, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (16442731..16447933, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (16417555..16422762, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (16472895..16478074, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (16375367..16380560, complement)

    Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene beta-secretase 1 Neighboring gene ring finger protein 214 Neighboring gene proprotein convertase subtilisin/kexin type 7 Neighboring gene SID1 transmembrane family member 2 Neighboring gene uncharacterized LOC119871805 Neighboring gene platelet activating factor acetylhydrolase 1b catalytic subunit 2 Neighboring gene microRNA mir-8871

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transgelin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051809.1 Reference ROS_Cfam_1.0

      Range
      16334629..16339831 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038664778.1 → XP_038520706.1  transgelin

      UniProtKB/TrEMBL
      A0A8C0JK50, A0A8C0RDD6, A0A8P0PS41
      Conserved Domains (2) summary
      pfam00402
      Location:175 → 199
      Calponin; Calponin family repeat
      cd21279
      Location:23 → 143
      CH_TAGLN; calponin homology (CH) domain found in transgelin

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049265.1 Alternate UMICH_Zoey_3.1

      Range
      16472895..16478074 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038474912.1 → XP_038330840.1  transgelin

      Conserved Domains (2) summary
      pfam00402
      Location:175 → 199
      Calponin; Calponin family repeat
      cd21279
      Location:23 → 143
      CH_TAGLN; calponin homology (CH) domain found in transgelin

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

      Range
      16375367..16380560 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038600241.1 → XP_038456169.1  transgelin

      Conserved Domains (2) summary
      pfam00402
      Location:175 → 199
      Calponin; Calponin family repeat
      cd21279
      Location:23 → 143
      CH_TAGLN; calponin homology (CH) domain found in transgelin

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

      Range
      16417555..16422762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038536042.1 → XP_038391970.1  transgelin

      UniProtKB/TrEMBL
      A0A8C0JK50, A0A8C0RDD6, A0A8P0PS41
      Conserved Domains (2) summary
      pfam00402
      Location:175 → 199
      Calponin; Calponin family repeat
      cd21279
      Location:23 → 143
      CH_TAGLN; calponin homology (CH) domain found in transgelin

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      16442731..16447933 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_536561.7 → XP_536561.2  transgelin

      UniProtKB/TrEMBL
      A0A8C0JK50, A0A8C0RDD6, A0A8P0PS41
      Conserved Domains (2) summary
      pfam00402
      Location:175 → 199
      Calponin; Calponin family repeat
      cd21279
      Location:23 → 143
      CH_TAGLN; calponin homology (CH) domain found in transgelin
    Nucleotide Protein
    Heading Accession and Version

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