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    CG7896 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43552, updated on 10-May-2024

    Summary

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    Official Symbol
    CG7896provided by FlyBase
    Primary source
    FLYBASE:FBgn0039728
    Locus tag
    Dmel_CG7896
    See related
    AllianceGenome:FB:FBgn0039728
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CT23878; Dmel\CG7896; tartan/capricious-like
    Summary
    Is expressed in spermatozoon. Orthologous to human LRRN4 (leucine rich repeat neuronal 4). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG7896 in Genome Data Viewer
    Location:
    99D1-99D1; 3-100 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (29983426..29990785)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (25809148..25816507)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Vacuolar protein sorting 13B Neighboring gene Tachykinin-like receptor at 99D Neighboring gene Acid phosphatase 1 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Drosophila convoluted/dALS is an essential gene required for tracheal tube morphogenesis and apical matrix organization. Swanson LE, et al. Genetics, 2009 Apr. PMID 19171940, Free PMC Article
    2. Bioinformatic analysis suggests potential mechanisms underlying parasitoid venom evolution and function. Alvarado G, et al. Genomics, 2020 Mar. PMID 31247332
    3. Single-nucleus RNA-sequencing in pre-cellularization Drosophila melanogaster embryos. Albright AR, et al. PLoS One, 2022. PMID 35749552, Free PMC Article
    4. Harnessing the paradoxical phenotypes of APOE ɛ2 and APOE ɛ4 to identify genetic modifiers in Alzheimer's disease. Kim YW, et al. Alzheimers Dement, 2021 May. PMID 33576571, Free PMC Article
    5. Impaired retrograde transport by the Dynein/Dynactin complex contributes to Tau-induced toxicity. Butzlaff M, et al. Hum Mol Genet, 2015 Jul 1. PMID 25794683

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG7896-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      29983426..29990785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143497.3 → NP_651754.1  uncharacterized protein Dmel_CG7896 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651754.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      E4NKH3, Q95TQ7, Q9VAD1
      Related
      FBpp0084911
      Conserved Domains (6) summary
      cd00116
      Location:273 → 535
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:477 → 497
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:524 → 547
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:884 → 925
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:328 → 388
      LRR_8; Leucine rich repeat
      cl15307
      Location:1121 → 1168
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VAD1 Q9VAD1

    Gene LinkOut

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