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    Ccdc102a coiled-coil domain containing 102A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361363, updated on 11-Apr-2024

    Summary

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    Official Symbol
    Ccdc102aprovided by RGD
    Official Full Name
    coiled-coil domain containing 102Aprovided by RGD
    Primary source
    RGD:1308684
    See related
    Ensembl:ENSRNOG00000025843 AllianceGenome:RGD:1308684
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308684
    Summary
    Predicted to be part of myosin complex. Orthologous to human CCDC102A (coiled-coil domain containing 102A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 32.7), Spleen (RPKM 30.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    19p13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (10108553..10124652)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (10102543..10118657)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (10518822..10535162)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor G1 Neighboring gene adhesion G protein-coupled receptor G5 Neighboring gene docking protein 4 Neighboring gene RNA polymerase II subunit C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of myosin complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 102A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108437.1 → NP_001101907.1  coiled-coil domain-containing protein 102A

      See identical proteins and their annotated locations for NP_001101907.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474006
      UniProtKB/TrEMBL
      A6JY36
      Related
      ENSRNOP00000035778.6, ENSRNOT00000030229.7
      Conserved Domains (3) summary
      pfam15905
      Location:212 → 529
      HMMR_N; Hyaluronan mediated motility receptor N-terminal
      pfam16046
      Location:381 → 464
      FAM76; FAM76 protein
      cl19849
      Location:104 → 228
      DUF881; Bacterial protein of unknown function (DUF881)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      10108553..10124652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039097809.2 → XP_038953737.1  coiled-coil domain-containing protein 102A isoform X2

      Conserved Domains (1) summary
      TIGR02168
      Location:109 → 344
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. XM_063278103.1 → XP_063134173.1  coiled-coil domain-containing protein 102A isoform X2

    3. XM_039097808.2 → XP_038953736.1  coiled-coil domain-containing protein 102A isoform X1

      UniProtKB/TrEMBL
      D3ZSR7
      Conserved Domains (2) summary
      COG1196
      Location:242 → 516
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cl19849
      Location:104 → 228
      DUF881; Bacterial protein of unknown function (DUF881)

    4. XM_006255116.5 → XP_006255178.1  coiled-coil domain-containing protein 102A isoform X1

      See identical proteins and their annotated locations for XP_006255178.1

      UniProtKB/TrEMBL
      D3ZSR7
      Conserved Domains (2) summary
      COG1196
      Location:242 → 516
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cl19849
      Location:104 → 228
      DUF881; Bacterial protein of unknown function (DUF881)
    Nucleotide Protein Strain
    Heading Accession and Version

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