TRIM54 tripartite motif containing 54 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: TRIM54provided by VGNC
Official Full Name: tripartite motif containing 54provided by VGNC
Primary source: VGNC:VGNC:47826
See related: Ensembl:ENSCAFG00845006917
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 17

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	17	NC_051821.1 (21578911..21599695)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	17	NC_006599.4 (21149470..21170217)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	17	NC_049238.1 (21323359..21344115)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	17	NC_049277.1 (21265637..21286390)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	17	NC_049758.1 (21276455..21295890)

Chromosome 17 - NC_051821.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: tripartite motif-containing protein 54

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051821.1 Reference ROS_Cfam_1.0

Range

21578911..21599695

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038691020.1 → XP_038546948.1 tripartite motif-containing protein 54 isoform X1

UniProtKB/TrEMBL

A0A8C0LHX6, A0A8C0S197, A0A8I3N499

Related

ENSCAFP00845009600.1, ENSCAFT00845012281.1

Conserved Domains (3) summary

smart00502
Location:170 → 273

BBC; B-Box C-terminal domain

cd16761
Location:24 → 82

RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

cd19833
Location:124 → 166

Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins
XM_038691021.1 → XP_038546949.1 tripartite motif-containing protein 54 isoform X2

UniProtKB/TrEMBL

A0A8C0LHX6

Conserved Domains (3) summary

smart00502
Location:170 → 273

BBC; B-Box C-terminal domain

cd16761
Location:24 → 82

RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

cd19833
Location:124 → 166

Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

NC_049277.1 Alternate UMICH_Zoey_3.1

Range

21265637..21286390

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038498520.1 → XP_038354448.1 tripartite motif-containing protein 54 isoform X1

Conserved Domains (3) summary

smart00502
Location:170 → 273

BBC; B-Box C-terminal domain

cd16761
Location:24 → 82

RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

cd19833
Location:124 → 166

Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins
XM_038498521.1 → XP_038354449.1 tripartite motif-containing protein 54 isoform X2

Conserved Domains (3) summary

smart00502
Location:170 → 273

BBC; B-Box C-terminal domain

cd16761
Location:24 → 82

RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

cd19833
Location:124 → 166

Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049758.1 Alternate UNSW_CanFamBas_1.0

Range

21276455..21295890

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038625121.1 → XP_038481049.1 tripartite motif-containing protein 54 isoform X1

Conserved Domains (3) summary

smart00502
Location:170 → 273

BBC; B-Box C-terminal domain

cd16761
Location:24 → 82

RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

cd19833
Location:124 → 166

Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins
XM_038625122.1 → XP_038481050.1 tripartite motif-containing protein 54 isoform X2

Conserved Domains (3) summary

smart00502
Location:170 → 273

BBC; B-Box C-terminal domain

cd16761
Location:24 → 82

RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

cd19833
Location:124 → 166

Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049238.1 Alternate UU_Cfam_GSD_1.0

Range

21323359..21344115

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038561071.1 → XP_038416999.1 tripartite motif-containing protein 54 isoform X1

UniProtKB/TrEMBL

A0A8C0LHX6, A0A8C0S197, A0A8I3N499

Conserved Domains (3) summary

smart00502
Location:170 → 273

BBC; B-Box C-terminal domain

cd16761
Location:24 → 82

RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

cd19833
Location:124 → 166

Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins
XM_038561072.1 → XP_038417000.1 tripartite motif-containing protein 54 isoform X2

UniProtKB/TrEMBL

A0A8C0LHX6

Conserved Domains (3) summary

smart00502
Location:170 → 273

BBC; B-Box C-terminal domain

cd16761
Location:24 → 82

RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

cd19833
Location:124 → 166

Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

21149470..21170217

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005630256.4 → XP_005630313.1 tripartite motif-containing protein 54 isoform X1

UniProtKB/TrEMBL

A0A8C0LHX6, A0A8C0S197, A0A8I3N499

Conserved Domains (3) summary

smart00502
Location:170 → 273

BBC; B-Box C-terminal domain

cd16761
Location:24 → 82

RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

cd19833
Location:124 → 166

Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins
XM_038452949.1 → XP_038308877.1 tripartite motif-containing protein 54 isoform X2

UniProtKB/TrEMBL

A0A8C0LHX6

Conserved Domains (3) summary

smart00502
Location:170 → 273

BBC; B-Box C-terminal domain

cd16761
Location:24 → 82

RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

cd19833
Location:124 → 166

Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins