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    OPN1SW opsin 1, short wave sensitive [ Canis lupus familiaris (dog) ]

    Gene ID: 482267, updated on 5-Mar-2024

    Summary

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    Official Symbol
    OPN1SWprovided by VGNC
    Official Full Name
    opsin 1, short wave sensitiveprovided by VGNC
    Primary source
    VGNC:VGNC:44129
    See related
    Ensembl:ENSCAFG00845023668
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See OPN1SW in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (7631370..7634827)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (7552256..7555713)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (7723749..7727206)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (7836320..7839777)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (7578515..7581972)

    Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 136 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene calumenin Neighboring gene golgi associated RAB2 interactor 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor outer segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short-wave-sensitive opsin 1
    Names
    opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051818.1 Reference ROS_Cfam_1.0

      Range
      7631370..7634827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038685972.1 → XP_038541900.1  short-wave-sensitive opsin 1

      UniProtKB/TrEMBL
      A0A8C0L7B2, A0A8C0PGR1, A0A8I3PJU6
      Related
      ENSCAFP00845032779.1, ENSCAFT00845041791.1
      Conserved Domains (1) summary
      cd15076
      Location:36 → 314
      7tmA_SWS1_opsin; short wave-sensitive 1 opsins, member of the class A family of seven-transmembrane G protein-coupled receptors

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049274.1 Alternate UMICH_Zoey_3.1

      Range
      7836320..7839777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038495279.1 → XP_038351207.1  short-wave-sensitive opsin 1

      Conserved Domains (1) summary
      cd15076
      Location:36 → 314
      7tmA_SWS1_opsin; short wave-sensitive 1 opsins, member of the class A family of seven-transmembrane G protein-coupled receptors

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

      Range
      7578515..7581972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038620295.1 → XP_038476223.1  short-wave-sensitive opsin 1

      Conserved Domains (1) summary
      cd15076
      Location:36 → 314
      7tmA_SWS1_opsin; short wave-sensitive 1 opsins, member of the class A family of seven-transmembrane G protein-coupled receptors

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

      Range
      7723749..7727206
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038556374.1 → XP_038412302.1  short-wave-sensitive opsin 1

      UniProtKB/TrEMBL
      A0A8C0L7B2, A0A8C0PGR1, A0A8I3PJU6
      Conserved Domains (1) summary
      cd15076
      Location:36 → 314
      7tmA_SWS1_opsin; short wave-sensitive 1 opsins, member of the class A family of seven-transmembrane G protein-coupled receptors

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      7552256..7555713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_539386.6 → XP_539386.2  short-wave-sensitive opsin 1

      UniProtKB/TrEMBL
      A0A8C0L7B2, A0A8C0PGR1, A0A8I3PJU6
      Conserved Domains (1) summary
      cd15076
      Location:36 → 314
      7tmA_SWS1_opsin; short wave-sensitive 1 opsins, member of the class A family of seven-transmembrane G protein-coupled receptors
    Nucleotide Protein
    Heading Accession and Version

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