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Submitted SNP(ss) Details: ss105439094           
Submitter
HandleSNP500CANCER
Submitter SNP IDGPX4-02
RefSNP(rs#)rs713041
Submitted Batch IDSNP500CANCER_07_03_08_D
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTAQMAM
Ascertainment Samplesize532
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 14
Genotype Summarypopulation count: 14
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss105439094|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 TGGCCCAGAT GGGCAGCGGA CAGGAAGGGC AGCCTCAGCC CCTTGCAGGG GTGGCCCCAC
 AGTTTGGACA CCGTCTCTCC ACAGTTCCTC ATCGACAAGA ACGGCTGCGT GGTGAAGCGC
 TACGGACCCA TGGAGGAGCC CCTGGTAGGT CCTCTCTAGG GASCCCGCTT GAGGCTCGGG
 GGCTTGGGAG GTAGCTGCCC TAACCCAGCT TTCCTCCCCG ACAGGTGATA GAGAAGGACC
 TGCCCCACTA TTTCTAGCTC CACAAGTGTG TGGCCCCGCC CGAGCCCCTG CCCACGCCCT
 Y
 GGAGCCTTCC ACCGGCACTY ATGACGGCCT GCCTGCAAAC CTGCTGGTGG GGCAGACCCG
 AAAATCCAGC GTGCACCCCG CCGGAGGAAG GTCCCATGGC CTGCTGGGCT TGGCTCRGCG
 CCCCCMCCCC TGGCTACCTT GTGGGAATAA ACAGACAAAT TAGMCTGCTG GATCTTTCTG
 CGTRGGGGCT TGGGGGGCCC TTTYGCCAGG GGCCCCTCCA TGTCAGGGCY AGTTGCCGTC
 AGCTGCCAGG CTGGGGGTGC CATGGAGGTG GCGTGTTGTT GCCCCCTCTT CCTCCAGGCT

  Submitted Frequency for ss105439094 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
AFR1
- MULTI-NATIONAL 		48C/C=0.58333302
C/T=0.29166701
T/T=0.12500000
SNP500CANCER_07_03_08_BSNP500CANCER
HISP1
- MULTI-NATIONAL 		46C/C=0.39130399
C/T=0.30434799
T/T=0.26087001
N/N=0.04347800
SNP500CANCER_07_03_08_BSNP500CANCER
CAUC2
- MULTI-NATIONAL 		120C/T=0.46666700
C/C=0.30000001
T/T=0.18333299
N/N=0.05000000
SNP500CANCER_07_03_08_BSNP500CANCER
CAUC3
- MULTI-NATIONAL 		132C/T=0.45454499
C/C=0.28787899
T/T=0.16666700
N/N=0.09090900
SNP500CANCER_07_03_08_BSNP500CANCER
P2
- MULTI-NATIONAL 		420C/T=0.43333301
C/C=0.38571399
T/T=0.15238100
N/N=0.02857100
SNP500CANCER_07_03_08_BSNP500CANCER
PAC3
- MULTI-NATIONAL 		178C/T=0.47191000
C/C=0.29213500
T/T=0.21348301
N/N=0.02247200
SNP500CANCER_07_03_08_BSNP500CANCER
HISP3
- MULTI-NATIONAL 		98C/C=0.55102003
C/T=0.34693900
N/N=0.06122400
T/T=0.04081600
SNP500CANCER_07_03_08_BSNP500CANCER
PAC1
- MULTI-NATIONAL 		48C/T=0.45833299
C/C=0.37500000
T/T=0.16666700
SNP500CANCER_07_03_08_BSNP500CANCER
P3
- MULTI-NATIONAL 		560C/T=0.41785699
C/C=0.39285699
T/T=0.13928600
N/N=0.05000000
SNP500CANCER_07_03_08_BSNP500CANCER
CAUC1
- MULTI-NATIONAL 		62C/C=0.41935501
C/T=0.41935501
T/T=0.16129000
SNP500CANCER_07_03_08_BSNP500CANCER
P1
- MULTI-NATIONAL 		204C/C=0.44117600
C/T=0.37254900
T/T=0.17647099
N/N=0.00980400
SNP500CANCER_07_03_08_BSNP500CANCER
AFR3
- MULTI-NATIONAL 		152C/C=0.50000000
C/T=0.36842099
T/T=0.09210500
N/N=0.03947400
SNP500CANCER_07_03_08_BSNP500CANCER
ASI2
- EAST ASIA 		180C/T=0.44444400
C/C=0.35555601
T/T=0.18888900
N/N=0.01111100
SNP500CANCER_07_03_08_BSNP500CANCER
AFR2
- WEST AFRICA 		120C/C=0.51666701
C/T=0.38333300
T/T=0.06666700
N/N=0.03333300
SNP500CANCER_07_03_08_BSNP500CANCER


  dbSNP summary of Genotypes for ss105439094 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
P1
- MULTI-NATIONAL 		202202C=0.63366336
T=0.36633664C/C=0.44554454
C/T=0.37623763
T/T=0.17821783
Pr(chiSq=3.631,df=1)
=0.100		Genotype
Freq.
CAUC1
- MULTI-NATIONAL 		6262C=0.62903225
T=0.37096775C/C=0.41935483
C/T=0.41935483
T/T=0.16129032
Pr(chiSq=0.319,df=1)
=0.584		Genotype
Freq.
AFR1
- MULTI-NATIONAL 		4848C=0.72916669
T=0.27083334C/C=0.58333331
C/T=0.29166666
T/T=0.12500000
Pr(chiSq=1.642,df=1)
=0.200		Genotype
Freq.
HISP1
- MULTI-NATIONAL 		4444C=0.56818181
T=0.43181819C/C=0.40909091
C/T=0.31818181
T/T=0.27272728
Pr(chiSq=2.719,df=1)
=0.100		Genotype
Freq.
PAC1
- MULTI-NATIONAL 		4848C=0.60416669
T=0.39583334C/T=0.45833334
C/C=0.37500000
T/T=0.16666667
Pr(chiSq=0.042,df=1)
=1.000		Genotype
Freq.
P2
- MULTI-NATIONAL 		408408C=0.62009805
T=0.37990198C/T=0.44607842
C/C=0.39705881
T/T=0.15686275
Pr(chiSq=0.578,df=1)
=0.479		Genotype
Freq.
CAUC2
- MULTI-NATIONAL 		114114C=0.56140351
T=0.43859649C/T=0.49122807
C/C=0.31578946
T/T=0.19298245
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
AFR2
- WEST AFRICA 		116116C=0.73275864
T=0.26724139C/C=0.53448278
C/T=0.39655173
T/T=0.06896552
Pr(chiSq=0.009,df=1)
=1.000		Genotype
Freq.
P3
- MULTI-NATIONAL 		532532C=0.63345867
T=0.36654136C/T=0.43984962
C/C=0.41353384
T/T=0.14661655
Pr(chiSq=0.742,df=1)
=0.403		Genotype
Freq.
CAUC3
- MULTI-NATIONAL 		120120C=0.56666666
T=0.43333334C/T=0.50000000
C/C=0.31666666
T/T=0.18333334
Pr(chiSq=0.020,df=1)
=1.000		Genotype
Freq.
AFR3
- MULTI-NATIONAL 		146146C=0.71232879
T=0.28767124C/C=0.52054793
C/T=0.38356164
T/T=0.09589041
Pr(chiSq=0.300,df=1)
=0.655		Genotype
Freq.
HISP3
- MULTI-NATIONAL 		9292C=0.77173913
T=0.22826087C/C=0.58695650
C/T=0.36956522
T/T=0.04347826
Pr(chiSq=0.110,df=1)
=0.752		Genotype
Freq.
PAC3
- MULTI-NATIONAL 		174174C=0.54022986
T=0.45977011C/T=0.48275861
C/C=0.29885057
T/T=0.21839081
Pr(chiSq=0.069,df=1)
=1.000		Genotype
Freq.
ASI2
- EAST ASIA 		178178C=0.58426964
T=0.41573033C/T=0.44943821
C/C=0.35955057
T/T=0.19101124
Pr(chiSq=0.499,df=1)
=0.527		Genotype
Freq.

  Submitted individual genotype for ss105439094 back to top
There is no individual genotype data for ss105439094.

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