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Submitted SNP(ss) Details: ss11150554           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr5.NT_006431.13_18848336
RefSNP(rs#)rs4976060
Submitted Batch IDWIBR_S224_SNPS_200310
Submitted DateNov 05, 2003
Publication Cited[1] SNPs detected by comparing chromosome 5 reads to NCBI build 34 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 3 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWIBR_S224_SNPS_200310
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS224P6645RA5.T0 -165 45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss11150554|allelePos=501|len=1001|taxid=9606|alleles='T/C'|mol=Genomic
 CTCAATGTGG TAAACATAGA ATTATCATGT GATCCATCAT TCCCACTCCT AGGTATATAC
 CAAAAATAAC TGGAAATAGC ATTCAAACAA AAACACGTAT GTAAATTTTC ATAGCAGCAC
 TATTCACAAG AGCCAAAAGA TGGAAACAGC CCAAATATTC ATCAATAGAT GAATAGATAA
 ATAAAATGTG GTATATCCAC ACAATGGAAT ATTATTAAAC TATAAAAAGA AATGAAGTAC
 TGATACATAC TACAACATGA ATGAACCATG AAGGCATTAC ACTAAGTGAA GGAAGACACA
 AAAGACCATA TATTGTATTT ATATGAAATA TCCAGAATAG GCAAATCCAT TGAGACAGAA
 AGCAGATTTG TGGTTGCCAG GAGGGCAGAA ATGGGGAATG AATGCTTAAT TATTAATAGT
 ATGGGGTTTC CATTCGGGGT GACAAAAATT TCTCAAACTA GATATTTCAC AATATATAGT
 GATGATTTCA CAATATCGGC
 Y
 AAGCATGGTG GCTCATGCCT GTAATCCCAG CACTTTGGGA GGCTGAAGCA GGCGGATCAC
 CTGAGGTTGG GAGTTCCAAA CCAGCCTGGA CAACATGGTG AAACACCTGT CTCTACTAAA
 AATACAAAAA AAAAAAAAAG AAAGAAAGAA AGAAGAAAAA CGTTAGCCAG GTGTGGTGGT
 GCATGCCTGT AATCTTGGCT ACTCGGGAGG CTGAGGTAGG AGAATCACTT GAACCCGAGA
 GGCAGAGGTT GCAGTGCACG AGATCGCGCC ATTGCACTCA GCCTGGGCAA CAAGAGCGAA
 ACTCTGTCTC AAAAAAAAAG AAAAAAAAAA AATCATGAAA GTACTTAATG CCATTGAGCT
 GTCGAAACAG TTTAAATAAC AAAAATTAGA ATAAAAAAAT AAAATTGTCA TAATGGTAAA
 TTTTATGTTA TATGTATTTT GCCACAATAA AAAAAATTAA ATGATCAAAA TAAAATTATG
 GAGCCATGTC AAAGGACATA

  Submitted Frequency for ss11150554 back to top
There is no frequency submission for ss11150554.


  dbSNP summary of Genotypes for ss11150554 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.82499999
T=0.17500000C/C=0.66666669
C/T=0.31666666
T/T=0.01666667
Pr(chiSq=0.561,df=1)
=0.479
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.54444444
T=0.45555556C/T=0.60000002
C/C=0.24444444
T/T=0.15555556
Pr(chiSq=1.976,df=1)
=0.200
Genotype
Freq.
HapMap-JPT8888C=0.65909094
T=0.34090909C/T=0.45454547
C/C=0.43181819
T/T=0.11363637
Pr(chiSq=0.006,df=1)
=1.000
Genotype
Freq.
HapMap-YRI116116T=0.63793105
C=0.36206895C/T=0.58620691
T/T=0.34482759
C/C=0.06896552
Pr(chiSq=4.196,df=1)
=0.050
Genotype
Freq.

  Submitted individual genotype for ss11150554 back to top
There is no individual genotype data for ss11150554.

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