NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss1279019           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000804-33572
RefSNP(rs#)rs44812
Submitted Batch IDOVLP-000804-108
Submitted DateSep 02, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPSep 2 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC023958 SequenceAccession1:AC023958 SequenceVersion1:2 SequenceContigName1:Contig34 SequenceContigPosition1:3554 SequenceLocalName2:AL163032 SequenceAccession2:AL163032 SequenceVersion2:2 SequenceContigName2:Contig1 SequenceContigPosition2:95785 PolyBayesConfidence:92

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1279019|allelePos=101|len=201|taxid=9606|alleles='T/C'|mol=Genomic
 TATTTGAGGG AGAGCTGCCT CAATTCTGGA GGGGGATCAG GTGTTAGTAC AAAGAATTAC
 ACAGATGGAG GTTGGGCAGA GGTGGGGGAC CATCTAGAAA
 Y
 GAACTATTTC CATCCTTTGC CTAACATTTT CCAGTAGGAT GAGACTGTAT CCCCTTAAAG
 GGTTTTGAGA AAGTGGAGTC CATATATGGC ACTGTTATGT

  Submitted Frequency for ss1279019 back to top
There is no frequency submission for ss1279019.


  dbSNP summary of Genotypes for ss1279019 back to top
No sufficient data to compute Hardy-weinberg probability for ss1279019.


  Submitted individual genotype for ss1279019 back to top
There is no individual genotype data for ss1279019.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement