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Submitted SNP(ss) Details: ss16361196           
Submitter
HandleEGP_SNPS
Submitter SNP IDSTAT2-000744
RefSNP(rs#)rs11575218
Submitted Batch IDSTAT2-PDR90-012704
Submitted DateFeb 09, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPFeb 9 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 9
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16361196|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CTGCCTGGGC AAGGCCAGGG AACGAGGCCG AGATGGGGCC ATAGATCTGG GATATGACCT
 TCTGATGACC ATGGCTGGGA TGTCAGGGGG GCCTATGGGT CTAGCGATCA GTGCTGCACT
 TAAACCTGCA TTAAGGTCTG GGGTTCAGCA GTTGATCCAG TATTACCAAG ATCAGAAAGA
 CGCAAACATC TCTCAGCCGG AGACCACCAA GGAGGGTTTG AGGGCCATCT CAGATGTGAG
 TGACTTGGAA GAAAC
 R
 ACTACTCTGG CTTCTTTCAT ATCAGAAGTA GTAAGTTCAG CTCCCTACTG GGGGTGGGCC
 ATAATCAAGA GCTATGACTT AGATCCTGGG GCTGGGAGTC TTGAGATATA AAAGAATGTG
 GTAACCACAG AATTAATAAC TGTACTACCC TGACAAGCTA TATACATGTC TTCAAAATTT
 TAATCTGATT TATCCAGGAG GAAGGCTGTA CAGTAAAACG TAAGAACGTA AATGTTTGGG
 TGTTGAAGTC ACAGG

  Submitted Frequency for ss16361196 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90180A=0.94444400
G=0.05555600
0.105 +/-0.043STAT2-PDR90-012704EGP_SNPS


  dbSNP summary of Genotypes for ss16361196 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90180180A=0.94444442
G=0.05555556A/A=0.89999998
A/G=0.08888889
G/G=0.01111111
Pr(chiSq=2.105,df=1)
=0.150
Genotype
Freq.
HapMap-YRI224224A=0.77678573
G=0.22321428A/A=0.62500000
A/G=0.30357143
G/G=0.07142857
Pr(chiSq=1.739,df=1)
=0.200
Genotype
Freq.
HAPMAP-ASW9898A=0.87755102
G=0.12244898A/A=0.79591835
A/G=0.16326530
G/G=0.04081633
Pr(chiSq=2.830,df=1)
=0.100
Genotype
Freq.
HAPMAP-LWK180180A=0.72777778
G=0.27222222A/A=0.51111114
A/G=0.43333334
G/G=0.05555556
Pr(chiSq=0.789,df=1)
=0.403
Genotype
Freq.
HAPMAP-MEX100100A=0.99000001
G=0.01000000A/A=0.98000002
A/G=0.02000000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286A=0.89510489
G=0.10489511A/A=0.81118882
A/G=0.16783217
G/G=0.02097902
Pr(chiSq=1.614,df=1)
=0.251
Genotype
Freq.

  Submitted individual genotype for ss16361196 back to top
There is no individual genotype data for ss16361196.

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