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Submitted SNP(ss) Details: ss1856379           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000925-14114
RefSNP(rs#)rs812001
Submitted Batch IDOVLP-000925-4-8
Submitted DateOct 06, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPOct 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC025186 SequenceAccession1:AC025186 SequenceVersion1:4 SequenceContigName1:Contig13 SequenceContigPosition1:6896 SequenceLocalName2:AC040942 SequenceAccession2:AC040942 SequenceVersion2:2 SequenceContigName2:Contig20 SequenceContigPosition2:9484 PolyBayesConfidence:91

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1856379|allelePos=5001|len=5201|taxid=9606|alleles='A/G'|mol=Genomic
 gtagtttctt ttgctgtgca gaagctcttt agtttaatta gatcccaatt gtcaattttg
 gcttttgttg ccattgcttt aggtgtttta gacatgaagt ccttgcctat gcctatatcc
 tgaatggtac tgcctaggtt ttcttctagg gtttttatgg atttagatct aacatttcag
 tctttaatcc attttgaatt aatttttata taaggtgtaa ggaagggatc cagtttcagc
 tttctacata tggctagcca gttttcccag caccatttac taaataggga atcctttccc
 cattgcttgt ttctgtcagg tttgtcaaag atcagatggt tgtagatgtg tggtattatt
 tctaagggct ctgttctgtt ccattgatct atatctctgt tttggtacca gtaccatgct
 gtgttggtta ctgtagcctt gtagtatagt ttgaagtcag gtagtgtgat gcctccagct
 ttgttctttt ggcttaggat tgacttggca atgtgggctc ttttttggtt ccatatgaac
 tttaaagtag ttttttccaa ttctttgaag aaagtcattg gtagcttgat ggggatggca
 ttgaatctat aaattatctt aggcactatg gccattttca cgatattggc tcttcctatc
 catgagcatg gaatgttctt ccatttgttc gtgtcctctt ttatttcact gagcagtggt
 ttgtagtact ccttgaagag gtcgttcaca tcccttgtaa gttggattcc taggtatttt
 cttctctctg aagcaattgt gaatgggagt tcactcatga tttggctctg tgttagtctg
 ttattggtgt ataagaatgc ttgtgatttt tacacattga ttttgtatcc tgagactttg
 ctgaagttgc ttattagctt aaggagattt tgggctgaga cgatggggtt ttctaaatat
 acaatcatgt catctgcaaa aagggacaat ttgacttcct cttttcctaa ttgaataccc
 tttatttctt tctcctgcct aattgccctg gccagagctt ccaacactat gttaaatagg
 agtggtgaga gagggcatcc ttgtcttgca ccagttttcc aagggaatgc ttccagtttt
 tgcccattca gtatgatatt ggctgtgggt ttgtcataaa tagctcttat tattttgaga
 tatgttccat caatacgtaa tttattcaga gtttttagca tgaaggggtg ttgaattttg
 tcaaaggcct tttcggcatc tattgagata atcatgtggt ttttgtcttt ggttctgttt
 atatgatgga ttacgtttat tgatttgcgt atgttaaaca agccttgcat cccagggatg
 aagcccactt gcatcatggt ggataagctt tttgatgtgc tgctggattc cgtttgccag
 tattttattg aggatttttg cattgatgtt catcagggat attggtctaa aattctcttt
 ttttgttgtg tatttgccag gctttggtat cacgatgata ctggcctcat aaaatgagtt
 gggaggattg cttcttttcc tgttgattgg aatagtgtca gaaggaatgg taccagctcc
 tccttgtacc tctggttaga attcagtata atattggctg tgggtttgtc ataaatagct
 cttattattt tgagatacgt cccatcaata cctagtttat tgagagtttt tagcatgaag
 ggctgttgaa ttttgtcgaa gatcttttct gcatctattg aagatcacat gaatgaaatg
 aagcgagaag agaagtttag agaaaaaaga gtaaaaagaa acagacaaag cctccaagaa
 atatgggact atgtgaaaag accaaatcta cgtctgcttg gtgtacctga aagtgacagg
 gagaatggaa ccaagttgga aaatactctt caggatatta tccaggagaa ccagcccaac
 ctagcaaggc aagccaacat tcaaattcag gaaatacaga gaatgccaca aagatactcc
 ttaagaagag caactccaag acacaaaatt gtcagattca ccaaagttga aatgaaggaa
 aaaatgttaa gggcagccag agagaaaggt cgggttaccc acaaagggaa gcccatcaga
 ctaacagcag atctctcggc agaaactcta aaagccagaa gagagtgggg ggccaatatt
 caatgttctt TTTTTTTtta ttatacttta agttttaggg tacatgtgca caacgtgcag
 gttcgttaca tatgtataca tgtgccatgt tggtgtgctg cacccattaa ctcgtcattt
 agcattaggt atatctccta atgctatccc tcctccctcc ccccacccca caacagtccc
 cggtgtgtga tgttcccctt cctgtgtcca tgtgttctca ttgtccaatt cccacctatg
 agtgagaaca tgcggtgttt ggttttttgt ccttgcaata gtttgctgag aatgatggtt
 tccagcttca tccatgtccc tacaaaggac atgaactcat cattttttat ggctgcacag
 tattccatgg tgtatatatg ccacattttc tcaatccagt ctatcatcat tactgggtat
 atacccaaag gattataaat catgctgcta taaagacaca tgcacacgta tgtttattgc
 ggcactattc acaatAGCAA AGACTTGGAA tcaacattat taaagaaaag aattttcaaa
 ccagaatttc atatccagcc aaactaagct tcataagtga aggagaaata aaatccttta
 cagacaagca aatgctgaga gattttgtca ccaccaggcc tgccttacaa gggcttctga
 aagaagcact aaacatggaa aggaacaact ggtaccagcc actgaaaaat catgccaaaa
 ttgtaaagac catcgatgct aggaagaaac tacataaact aatgggcaaa ataaccagct
 aacatcataa tgacaggatc aaattcacac ataacaatat taaccttaaa tgtaaatggg
 ctaaatgctc caattaaaag acacagactg gcaaattgga taaagagtca aaacccatca
 gtgtgctgta ttcaggaaac ccatgttacg tgcagagaca cacataggct caaaataaag
 ggatggagga agatctacca agcaaatgga aaacaaaaaa aagcaggggt tgcaatccta
 gtctctgata aaacagactt taaaccaaca aagatcaaaa gagacaaaga aggccatcac
 ataatggtaa agggatcaat tcaacaagaa gagctaacta tcttaaatat atatgcaccc
 aatacaggaa cacccagatt cataaagcaa gtccttagag ccatacaaag agacttagac
 tcccatacaa taataatggg agactttaac accccactgt caacattaga cagatcaaca
 agacagaaag ttaacagaga tatccaggac ttgaactcag ctctgcacca agcagaccta
 atagacatct acagaactct ccaccccaaa tcaacagaag atacattctt ctcagcaaca
 tatcgcactt attccaaaat tgaccacata gttggaagta aagcattcct cagcaaatga
 aaaagaacag aaattataac aaactgtctc tcagaccaca gtgcaatcaa actagaactc
 aggattaaga aactcactcc aaactgctca actacatgga aactgaacaa cctgctcctg
 aatgactact gggtacataa cgaaatgaag gcagaaataa agatgttctt tgaaaccaat
 gagaacaaag acacaacata ccagaatctc tgggagacat ttaaagcagt gtgtagaggg
 aaatttatag cactaaatgc ccacaagaga aagcaggaaa gatctaaaat ggacacccta
 acatcacgat taaaagaact agagaagcaa gagcaaacac attcaaaagc tagcagaagg
 caagaaataa ctaagatcag agcagaactg aaggagacag agacataaaa aacccttcaa
 aaaatcaatg aattcaggag ctggtttttt taaaagatca acaaaactga tagaccgcta
 gcaagactaa taaagcagaa aacagagaag aatcaaatag acgcaataaa aaatgataaa
 ggggatatca ccactgatcc cacagaaata cactaccatc agagaatact ataaacacct
 ctatgcaaat aaactagaaa atctagaaga aatcgataaa ttcctggaca catacaccct
 cccaagacta aatcaggaag aagttgaatc cctgaataga ccaataacag gctctgaaat
 tgaggcaata attaatagcc taccaaccaa aaaaagtcca ggaccagaca gattcacagc
 cgaattctac cagaggtaca aggaggagtt ggtaccattc cttctgacaa tattccaatc
 agtagaaaaa gaagaaatcc tcctaactca ttttatgagg ccagcatcat cctgatacca
 aagcctagca gagacacaac aaaaaaagag aattttagac caatatccct gatgaacatc
 gatgcaaaaa tcctcaataa aatactggca aactgaatcc agcagcacat caaaaagttt
 attcaccatg atcaagtggg cttcatccct gggatgcaag gcttgttcaa catatgcaaa
 tcaataaacg taatccatca tataaacaga accaaagaca aaaactacat gattatctca
 atagatgcag aCTTAGTTTT TTATCATATG CAATATAAGT TACATAAAAG GTTTGACCGC
 TATTAAAATC ACATACTCTA GAAAGAAAAA ACACAGTATT TGTAATTTCA CAAAATTATT
 TCCAACTTCA TTTGATTGAA TTCATCATAT TCTTTCCTAA AAACACTTGT GCTTGAGAGA
 AAAGAAGACG GGCAATACTG
 R
 GAGCAGAGAA AATGTGGGAA AACACATCAA AAGAAAAGTT GGGACTTCCA TGACAACTTA
 ACTCATGTCA CAATGCTCAA GTACCAGAAC TTGCAGATAA CCAACTACGC GACAAAAGTC
 AATGTATTAT GAAAAATAAC ATTTCTTCAT GTATAAATTA TTGTTAGATA GAAATTCAAT
 CATGTTATAC TTAACAGTTT

  Submitted Frequency for ss1856379 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184A=1.00000000
G=0.00000000
1_2004SEQUENOM


  dbSNP summary of Genotypes for ss1856379 back to top
No sufficient data to compute Hardy-weinberg probability for ss1856379.


  Submitted individual genotype for ss1856379 back to top
There is no individual genotype data for ss1856379.

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