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Submitted SNP(ss) Details: ss1857276           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000925-32465
RefSNP(rs#)rs554026
Submitted Batch IDOVLP-000925-4-10
Submitted DateOct 06, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPOct 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC004451 SequenceAccession1:AC004451 SequenceVersion1:1 SequenceContigName1:Contig1 SequenceContigPosition1:46035 SequenceLocalName2:AC068632 SequenceAccession2:AC068632 SequenceVersion2:7 SequenceContigName2:Contig4 SequenceContigPosition2:2625 PolyBayesConfidence:89

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1857276|allelePos=523|len=1145|taxid=9606|alleles='A/G'|mol=Genomic
 AACTCGGGTA CAAACACGTA TACTTTTAGA TCATAGCACT CAGCTCTATC TCTTCATTCT
 GCTTCCTAGT GAGTTTCACT CACATTCAAA TCATTTCCTG TAATTTGCTG AAAACTTTAG
 CAACCCAACT CAAGTttttg ttttgttttg ttttgttttT CCCATGCAAA ACCTAACAGC
 TATCTTAAGG AAATGCAATG TCTTTATTTT TGCTCAGATG ACAAcctgcc ctttcagttc
 cttgacctca tctccacttg attcaaccta agtaaccaaa tcccaatagt cacatctggc
 ccttgttgtc atcaTGAGAA GTTTAGAATA AAAGACTGAG ATGATTAAAT CTCTCACAGC
 CTCCTTCTTT CCAGTTCTCT CTTTCAGATG TTTGAGGACA GCAGTTCAAG ATTTTGTCTC
 ATTCACACAT TTGATAGCTT GATCTCTCTG TTTTCTCAAT TGTCATCATT TTTGTCATTT
 CCTTTCTATC CTCCTTGTAA TTCACTATCA TGTTAATATT TT
 R
 TTTATCTAAG TTAATCAAGC TCTTGCATCT TTCTGCCAAA CCCCAATTTG GGATCATTTG
 TACTAGTCTA GCATctccgt gcttccacca gaactactgg agaaaatcac agaacaatga
 aagttggtaa tggtacacat tcatgatgac cagcagcaac caggtcctaa tgctgcccag
 agattcttag ttgtgtcaac ttcctctctg caattctcca cagaagtcat ttccaggtat
 ctttatcttt ctctcttaca gcatttgccc tcctctatcc ctccttccaa gatataattt
 aacttcttac tgcaatggag aaagtattaa ccatcagatg agaagaacca ccccaacttt
 gcacccccTG TATTAAATAT AAAGCatgta tattatatgc atatatatgg aatacataca
 ttatgcatcc atatctaaca taatggatac tatatatacg taaatatata acataaaata
 tatatCCATG TCTTGTACAC ATTTTATCTC TACAAAACTG ACCTCATTAA AGTTGCAAAT
 AGCAAGTAAC TGGGCCACTT AATCTAATAG ACACATTGTG ACCCTTAACA CAATTTTTTT
 TTTTTTGGAC TCTCCATCAG GC

  Submitted Frequency for ss1857276 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
CEPH
- MULTI-NATIONAL 		184G=0.56000000
A=0.44000000
0.493 +/-0.0121_2004SEQUENOM


  dbSNP summary of Genotypes for ss1857276 back to top
No sufficient data to compute Hardy-weinberg probability for ss1857276.


  Submitted individual genotype for ss1857276 back to top
There is no individual genotype data for ss1857276.

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