NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss21228853           
Submitter
HandleSSAHASNP
Submitter SNP IDWGSA-200403-chr15.chr15.NT_010194.16_27992479
RefSNP(rs#)rs12898197
Submitted Batch IDWGSA-200403-chr15
Submitted DateMar 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGSA-200403
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence positionAADD01143662.1 7364

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss21228853|allelePos=501|len=1001|taxid=9606|alleles='C/T'|mol=Genomic
 GTAtggtggc atgcgcctgt agtcccagct actcgggagg ctgaggcagg agaatctctt
 gaacccagga ggggaggttg cagtgagctg agattgggcc actgcactct agcgtgagtg
 acagagcgag actccgtcta gtctcaaaaa acaaacaaac aaaaaTAGGT TGCTAGCCCA
 ACCCTCAGAA TTTCTGGAAT Ggagttctac tcactgagta ggtcttgaat ggagccccaa
 aatttggatt tctaattagt tgccaggtga tagtaatact actcatccaa gaatcacaat
 atgagaacca ctgTTCTAAG TGATATCTAT TTGCTTGTTT TCAGAAGTAA GATAGTTGAG
 ATCACAAGAA GAGTTGAGGA AACCAAGAAA GAATTTTCTT ATTCCCATGA AAATCTCAGG
 CCTAGTTCTG TGTATTCATG TATTCAGCGC CATCTTTTCC CTTCTGCAGG GTTCTGGTAT
 TGGGTGTCTT TTTTtttttt
 Y
 tttttctttt tctttttttt tttgagacgg agtttcgctc ttgtctccca gactggagtg
 caatggcgca atctcggctc actgaaacct ctgcctcctg ggtccaagtg attctcctgc
 ctcggcctcc tgagtggctg ggattacagg cacccaccat caGCATTTTG CTGCCCGATT
 CTTAAATATT ACACACAGCC AACGAATATC AGAAGTTTGA GGGAAGTCTC TCTTGTGGGA
 GAGAGAAATT GAAATAACAA AAAGTGAATT GGTGAAAACA GAGACTAAAG AAGGAAAATA
 AAACTATATA CAGTTAGACA TATTTACTAT TTCTAGAGTT ACATGTGAGA TACATACATA
 TATATGTAGT CAGGAGAAAG TTGCAACCAT GAAACAAAAG CAGACAGAAT AATTTTTTTT
 AAAAAGAAGA AATAGTGTTC AGGATATTAA AAAAAGAGCC TTAGGATTGA AAATAGGAGG
 CTGGGCATGG TGGCCCATGC

  Submitted Frequency for ss21228853 back to top
There is no frequency submission for ss21228853.


  dbSNP summary of Genotypes for ss21228853 back to top
No sufficient data to compute Hardy-weinberg probability for ss21228853.


  Submitted individual genotype for ss21228853 back to top
There is no individual genotype data for ss21228853.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement