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Submitted SNP(ss) Details: ss23143925           
Submitter
HandlePARC
Submitter SNP IDPPARG-000336
RefSNP(rs#)rs4135302
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143925|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CCCTTCTTCA TTCTCTCAGC TATTTAATTT TACAGAATTT AGATAGCAGT CAGTATCATT
 TTGGGCTTCA CAAATCAGTA GAGTAAGTAC CTTAGGAATA TAACATTTCA GTAGCATGCT
 GATACCAACG TTTAAACTAT GGATACATAT TTGAATTCCA AATTTTTCTT CAAATAATGT
 GATTAGAGAT TCAACCAGGA ATAGACACCG AAAGAAAACT TTGCCCAAAT AAGCTTTCTG
 GTATTTCATA AGCAA
 R
 AGATTTAAGT TTTCCATTTA AGAAGCAATT GTGAATTTTA CAACAATAAA AAATGCAAGT
 GGATATTGAA CAGTCTCTGC TCTGATAATT CTAAATACAG TACAGTTCAC GCCCCTCACA
 AGACACTGAA CATGTGGGTC ACCGGCGAGA CAGTGTGGCA ATATTTTCCC TGTAATGTAC
 CAAGTCTTGC CAAAGCAGTG AACATTATGA CACAACTTTT TGTCACAGCT GGCTCCTAAT
 AGGACAGTGC CAGCC

  Submitted Frequency for ss23143925 back to top
There is no frequency submission for ss23143925.


  dbSNP summary of Genotypes for ss23143925 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848G=0.97916669
A=0.02083333G/G=0.95833331
A/G=0.04166667
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss23143925 back to top
There is no individual genotype data for ss23143925.

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