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Submitted SNP(ss) Details: ss23143926           
Submitter
HandlePARC
Submitter SNP IDPPARG-000812
RefSNP(rs#)rs1801282
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginG:Germline C:Germline
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143926|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 TGTCACAGCT GGCTCCTAAT AGGACAGTGC CAGCCAATTC AAGCCCAGTC CTTTCTGTGT
 TTATTCCCAT CTCTCCCAAA TATTTGGAAA CTGATGTCTT GACTCATGGG TGTATTCACA
 AATTCTGTTA CTTCAAGTCT TTTTCTTTTA ACGGATTGAT CTTTTGCTAG ATAGAGACAA
 AATATCAGTG TGAATTACAG CAAACCCCTA TTCCATGCTG TTATGGGTGA AACTCTGGGA
 GATTCTCCTA TTGAC
 S
 CAGAAAGCGA TTCCTTCACT GATACACTGT CTGCAAACAT ATCACAAGGT AAAGTTCCTT
 CCAGATACGG CTATTGGGGA CGTGGGGGCA TTTATGTAAG GGTAAAATTG CTCTTGTAGT
 TTGTCTTCCA GGTTGTGTTT GTTTTAATAC TATCATGTGT ACACTCCAGT ATTTTAATGC
 TTAGCTCGTT GCTATCGCGT TCATTTAAAA ACATGTTCAG AACCTTAAAA AAGGAAACCT
 AACCTAATCT ATTTT

  Submitted Frequency for ss23143926 back to top
There is no frequency submission for ss23143926.


  dbSNP summary of Genotypes for ss23143926 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848C=0.95833331
G=0.04166667C/C=0.91666669
C/G=0.08333334
Pr(chiSq=0.004,df=1)
=1.000		Genotype
Freq.
PARC-EUROPEAN-PANEL4444C=0.93181819
G=0.06818182C/C=0.86363637
C/G=0.13636364
Pr(chiSq=0.016,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss23143926 back to top
There is no individual genotype data for ss23143926.

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