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Submitted SNP(ss) Details: ss23143928           
Submitter
HandlePARC
Submitter SNP IDPPARG-002288
RefSNP(rs#)rs4135304
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143928|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TATTCCATAA ATTGTTGTTA TTCTGTTTTT CTGCAAGCCA TAAAAATTGT TGCTATCTTT
 CTTCAGTTAT TAATTTAGCC TGCCTCAGGG CAGAATGTCC TGGCTATACT GTGAAATAGT
 TCTTGAGTCA AAATTTGATA GTTTTGTCTA TTTTGAAAGA ACATGTCTAG AATGCAGTGC
 AACAAATATC AACAAATAGG TTAACTGAGA GGCAAGTACT GTTTGTGGTA AGGGATGGTT
 ATGTGATTCA AGTTA
 R
 TTTTCATTCT GTGCTAATCT CTAATTTTAT GCTTTGAATT TACTCTGAGT TTAATTTTTT
 TGAGTCTCAA TTTCCTCTAA AAGAATGATC CAGTACTTTT CTTCCTAATT AACATAGTGC
 AGAATGAAAT TATTAGCAAT TAAAACATTA TATTTTGTAC CAATAATTTA ACCCTTGTCT
 TATAGGGTCT CTGGCTACTA CTTCTTCATA AGCACTGTTT CTCTGTTAAA AATGTGAGCT
 CCTAAAGGCC CAAGA

  Submitted Frequency for ss23143928 back to top
There is no frequency submission for ss23143928.


  dbSNP summary of Genotypes for ss23143928 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848G=0.58333331
A=0.41666666A/G=0.50000000
G/G=0.33333334
A/A=0.16666667
Pr(chiSq=0.020,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23143928 back to top
There is no individual genotype data for ss23143928.

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