NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss23143932           
Submitter
HandlePARC
Submitter SNP IDPPARG-004274
RefSNP(rs#)rs4135247
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143932|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TATTGCACAA GAGTAAGTGG CAGTTATATG AATGAAGCGG GGCATCCGCA TGATCTCCTG
 TGAGTGTTTT GAGAAGATGA TCAAACTTAG AGAAAGCATC TTTGTGTCTA ATTTTTTTAA
 ATGATGAAAT TATTTCCCAC TTTCATTAAT ATTTTCCTGT GAAGAAATTG AAGTTATTCT
 TTGGGCCTAA ATAAAAGTGA CAATTACATG TTTTCTTCTC AGAGGCATTG AGAAACTTGG
 ATTATAATGT TTTTC
 R
 TACACTGAAG TAGAAGTCCA GAAAAGATTT GAGTTATTGA CACAGATCTT CTTTTTTTTT
 TGAGACAGAG CCTCACTCTG TCACCCAGGC TAGAGTGCAG AGGCCTGATA TCATATTTCA
 CCACAGCCTC AACCTCCCTG GGCTTCGGTG ATCCTCCCAC CTCAGCCTCA CTAGTAGCTG
 GGACTACAGG CGTACCTTAC CACACCCAGC AAATTTTTGT AATTTTTATA GAGACAGGAT
 TTCACCATGT TGTCC

  Submitted Frequency for ss23143932 back to top
There is no frequency submission for ss23143932.


  dbSNP summary of Genotypes for ss23143932 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848A=0.85416669
G=0.14583333A/A=0.75000000
A/G=0.20833333
G/G=0.04166667
Pr(chiSq=0.644,df=1)
=0.439		Genotype
Freq.
PARC-EUROPEAN-PANEL4646G=0.54347825
A=0.45652175A/G=0.47826087
G/G=0.30434781
A/A=0.21739130
Pr(chiSq=0.030,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss23143932 back to top
There is no individual genotype data for ss23143932.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement