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Submitted SNP(ss) Details: ss23143933           
Submitter
HandlePARC
Submitter SNP IDPPARG-004465
RefSNP(rs#)rs4135249
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143933|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TAAAAGTGAC AATTACATGT TTTCTTCTCA GAGGCATTGA GAAACTTGGA TTATAATGTT
 TTTCATACAC TGAAGTAGAA GTCCAGAAAA GATTTGAGTT ATTGACACAG ATCTTCTTTT
 TTTTTTGAGA CAGAGCCTCA CTCTGTCACC CAGGCTAGAG TGCAGAGGCC TGATATCATA
 TTTCACCACA GCCTCAACCT CCCTGGGCTT CGGTGATCCT CCCACCTCAG CCTCACTAGT
 AGCTGGGACT ACAGG
 Y
 GTACCTTACC ACACCCAGCA AATTTTTGTA ATTTTTATAG AGACAGGATT TCACCATGTT
 GTCCAAGCTG GTCTTGAACT CCTGGGCTCA AGGAATTCTC CCGCCTCGAC CTCCCAAAGT
 GCTGGGATTA CAGGCGTGAG CCATCGCAGC CTGCCCCTGA ATTCCATAAT TTCACGTGTA
 ATTAGAATTC AAGACCTTTT TCTTGAATAT TACTCTTGTC CATATTAATT TTTTTCTGAG
 TATGGCTCTA GCTTT

  Submitted Frequency for ss23143933 back to top
There is no frequency submission for ss23143933.


  dbSNP summary of Genotypes for ss23143933 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848C=0.95833331
T=0.04166667C/C=0.91666669
C/T=0.08333334
Pr(chiSq=0.004,df=1)
=1.000		Genotype
Freq.
PARC-EUROPEAN-PANEL4646C=0.89130437
T=0.10869565C/C=0.78260869
C/T=0.21739130
Pr(chiSq=0.070,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss23143933 back to top
There is no individual genotype data for ss23143933.

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