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Submitted SNP(ss) Details: ss23143934           
Submitter
HandlePARC
Submitter SNP IDPPARG-004531
RefSNP(rs#)rs4135250
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143934|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 ACACTGAAGT AGAAGTCCAG AAAAGATTTG AGTTATTGAC ACAGATCTTC TTTTTTTTTT
 GAGACAGAGC CTCACTCTGT CACCCAGGCT AGAGTGCAGA GGCCTGATAT CATATTTCAC
 CACAGCCTCA ACCTCCCTGG GCTTCGGTGA TCCTCCCACC TCAGCCTCAC TAGTAGCTGG
 GACTACAGGC GTACCTTACC ACACCCAGCA AATTTTTGTA ATTTTTATAG AGACAGGATT
 TCACCATGTT GTCCA
 R
 GCTGGTCTTG AACTCCTGGG CTCAAGGAAT TCTCCCGCCT CGACCTCCCA AAGTGCTGGG
 ATTACAGGCG TGAGCCATCG CAGCCTGCCC CTGAATTCCA TAATTTCACG TGTAATTAGA
 ATTCAAGACC TTTTTCTTGA ATATTACTCT TGTCCATATT AATTTTTTTC TGAGTATGGC
 TCTAGCTTTA TCATTTTTTT CTGACTTAAC TCTGATTAAC CTCTTTTTTC ATCACCAGTA
 CTTGGCAGAT TTTGT

  Submitted Frequency for ss23143934 back to top
There is no frequency submission for ss23143934.


  dbSNP summary of Genotypes for ss23143934 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848A=0.77083331
G=0.22916667A/A=0.54166669
A/G=0.45833334
Pr(chiSq=0.861,df=1)
=0.371		Genotype
Freq.
PARC-EUROPEAN-PANEL4646A=0.93478262
G=0.06521739A/A=0.86956519
A/G=0.13043478
Pr(chiSq=0.014,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss23143934 back to top
There is no individual genotype data for ss23143934.

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